MS003218 (gene) Bitter gourd (TR) v1

Overview


Name	MS003218
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L34
Location	scaffold234: 1288810 .. 1290111 (+)
RNA-Seq Expression	MS003218
Synteny	MS003218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCGACTTACGTACCGTAAGCGTCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACGCCTGGTATTTTCCTTCCCACTTAATCAATTCCTTTCAGTAGCTCATGTTCTCCCTTTCATGTTCAATTTCGCAAAAAATTTTAGTAGCCATGTTCAAGTTTTAGTACCAGTCGCATAATGGGTGTCGTGATGCTGCGTTTTAGGGGGGAAGTTGATCTATCAAACCACCAAAAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGAAAGAGAATCCAAGGGGTATGTGTGATTTTATGCCTTCGATCAACTAGGCGTTATTTAAGTGTGATTATTATTTATTGATTGGAAGTTCTTTATTTTCTTTGGGTGTTTGTTTTTCCGACTTTTTATCATTCTTATTGAATCTGATGTGTGGGCATTCTCATGTTCTCTCACTGATGCGGATGTATTTCTCTTTTTGCATTTTCTCCCCTGTTCTGGATATACCGTGGTATATCTTTCTGTTGTGAATCTGTGATAGTTTGAAAAGTAGTAGTAGTTTGGTTCGAAGTTCCATTTCGTGCCTCTTAGTTTTTGATTTAATCCAGAATGTATGAAGTGTTTTATCTATATTTGTAAATACGTCTATAATTCCTTTTATTCAAATGCCACACCTTTTTTACCATTTCAAAACTTTGTTTTGTTGTGTAATCTTGGCTAGATAACAAACTTTAGTTGGCTTTTTTAATTCTGTTTCTGTACTATGAGCCAGCTTTGATTAATAGATATGTTATTCAGCATTTAAGCTTAGCTATTCCTAACGAATGGAGGACATGAATGTCAGTTGCGTGTAAACTCCAAGTCTCAAGTACATATACTGTCCAAGTTGTAACAATTGTGGCATTTTAGTGATCAATTGTGACTCCTCTCTTTCTTTTAGCTGACAGTAAATGTATCTGTTTCTGTATCGTCCCTTTTTTATTCTTATTTTAATTTTATTTACAGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGTAGAACCGTTAATCGACCATATGGTGGGGTGTTGTCAGGCAGTGCCGTTAGAGAGAGGTATGGGCTCCATTGAATTAACCCTGATATTTTTGGTTTCTTTCATTTTTATTCTCCAATCAAAGGAGACAAACTTAAGGAGGATTTCAACACTGCAGGATTATTCGTGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCCAGCAAGAGT

mRNA sequence

ATGGTGCAGCGACTTACGTACCGTAAGCGTCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACGCCTGGGGGGAAGTTGATCTATCAAACCACCAAAAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGAAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGTAGAACCGTTAATCGACCATATGGTGGGGTGTTGTCAGGCAGTGCCGTTAGAGAGAGGATTATTCGTGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCCAGCAAGAGT

Coding sequence (CDS)

ATGGTGCAGCGACTTACGTACCGTAAGCGTCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACGCCTGGGGGGAAGTTGATCTATCAAACCACCAAAAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGAAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTTGCTAGGAACCGTAGAACCGTTAATCGACCATATGGTGGGGTGTTGTCAGGCAGTGCCGTTAGAGAGAGGATTATTCGTGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCCAGCAAGAGT

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS

Homology

[Close]

BLAST of MS003218 vs. NCBI nr
Match: XP_022134504.1 (60S ribosomal protein L34-like [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. NCBI nr
Match: KZV29920.1 (hypothetical protein F511_17344 [Dorcoceras hygrometricum])

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. NCBI nr
Match: XP_004138165.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protein L34 [Cucumis sativus] >XP_008453201.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008453217.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008460833.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >KAA0057939.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0057954.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0063093.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KGN62245.1 hypothetical protein Csa_016921 [Cucumis sativus] >KGN63670.2 hypothetical protein Csa_013763 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. NCBI nr
Match: XP_009591909.1 (60S ribosomal protein L34-like [Nicotiana tomentosiformis])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of MS003218 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of MS003218 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.9e-57
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of MS003218 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.3e-55
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of MS003218 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.3e-55
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of MS003218 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-54
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of MS003218 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-53
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNR YGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of MS003218 vs. ExPASy TrEMBL
Match: A0A6J1BYX4 (60S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111006730 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.2e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. ExPASy TrEMBL
Match: A0A2Z7B870 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_17344 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. ExPASy TrEMBL
Match: A0A1S3BV34 (60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. ExPASy TrEMBL
Match: A0A5A7UWQ0 (60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00210 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. ExPASy TrEMBL
Match: A0A0A0LK03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS003218 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-56
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of MS003218 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNR YGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of MS003218 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNR YGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of MS003218 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRPYGGVLSGSAVRERII 93
          EYKRSRL+RNRRTVNR YGGVLSGSAVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of MS003218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134504.1	1.9e-56	100.00	60S ribosomal protein L34-like [Momordica charantia]	[more]
KZV29920.1	9.5e-56	98.33	hypothetical protein F511_17344 [Dorcoceras hygrometricum]	[more]
XP_004138165.3	2.1e-55	98.33	60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protei...	[more]
XP_009591909.1	2.8e-55	97.50	60S ribosomal protein L34-like [Nicotiana tomentosiformis]	[more]
XP_038889603.1	3.6e-55	98.33	60S ribosomal protein L34 [Benincasa hispida]	[more]

BLAST of MS003218 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	8.9e-57	95.83	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
Q42351	8.3e-55	90.83	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
P40590	8.3e-55	91.67	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q9FE65	4.1e-54	91.60	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	3.5e-53	90.00	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of MS003218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYX4	9.2e-57	100.00	60S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111006730 PE...	[more]
A0A2Z7B870	4.6e-56	98.33	Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_17344 PE=3...	[more]
A0A1S3BV34	1.0e-55	98.33	60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1	[more]
A0A5A7UWQ0	1.0e-55	98.33	60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LK03	1.0e-55	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=3 SV=1	[more]

BLAST of MS003218 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	5.9e-56	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	2.9e-55	91.60	ribosomal protein L34	[more]
AT3G28900.1	2.5e-54	90.00	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	1.5e-43	90.22	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 26..43 score: 50.4 coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 66..88 score: 44.1
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 4.0E-38 score: 129.6
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 1.3E-21 score: 78.0
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 2.8E-36 score: 125.3
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003218.1	MS003218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome