MS002480 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAATGGCGTGTGGACATCGTCAATGGGTTGAGCAGCGGACAGACACTGTTCATACATTGTAAGTCCAAAGACGATGATTTGGGAATACACAACCTTGCGGTCGGAGCTAAGTTTGGTTGGAACTTCAGAGACAATCTTTGGGGAACAACATTGTTCTGGTGTTACATGCGCAAACCGAACAATGCTAATGCTTCTTTTGAAGTATATTGGGATGACAAGAGTAAAGAACAATGGCTATATAATTTTTGCAATTGGGAGGATTGCATTTGGACCGCCAAAGATGATGGAATTTATATAAAAAATATCCTTGGGAATAAGGACGAGCTAGCTCACAAATGGGGA AAATGGCGTGTGGACATCGTCAATGGGTTGAGCAGCGGACAGACACTGTTCATACATTGTAAGTCCAAAGACGATGATTTGGGAATACACAACCTTGCGGTCGGAGCTAAGTTTGGTTGGAACTTCAGAGACAATCTTTGGGGAACAACATTGTTCTGGTGTTACATGCGCAAACCGAACAATGCTAATGCTTCTTTTGAAGTATATTGGGATGACAAGAGTAAAGAACAATGGCTATATAATTTTTGCAATTGGGAGGATTGCATTTGGACCGCCAAAGATGATGGAATTTATATAAAAAATATCCTTGGGAATAAGGACGAGCTAGCTCACAAATGGGGA AAATGGCGTGTGGACATCGTCAATGGGTTGAGCAGCGGACAGACACTGTTCATACATTGTAAGTCCAAAGACGATGATTTGGGAATACACAACCTTGCGGTCGGAGCTAAGTTTGGTTGGAACTTCAGAGACAATCTTTGGGGAACAACATTGTTCTGGTGTTACATGCGCAAACCGAACAATGCTAATGCTTCTTTTGAAGTATATTGGGATGACAAGAGTAAAGAACAATGGCTATATAATTTTTGCAATTGGGAGGATTGCATTTGGACCGCCAAAGATGATGGAATTTATATAAAAAATATCCTTGGGAATAAGGACGAGCTAGCTCACAAATGGGGA KWRVDIVNGLSSGQTLFIHCKSKDDDLGIHNLAVGAKFGWNFRDNLWGTTLFWCYMRKPNNANASFEVYWDDKSKEQWLYNFCNWEDCIWTAKDDGIYIKNILGNKDELAHKWG Homology
BLAST of MS002480 vs. NCBI nr
Match: XP_022143641.1 (S-protein homolog 1-like [Momordica charantia]) HSP 1 Score: 263.1 bits (671), Expect = 1.1e-66 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of MS002480 vs. NCBI nr
Match: XP_022143694.1 (S-protein homolog 1-like [Momordica charantia]) HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42 Identity = 73/112 (65.18%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of MS002480 vs. NCBI nr
Match: XP_004292390.1 (PREDICTED: uncharacterized protein LOC101314627 [Fragaria vesca subsp. vesca]) HSP 1 Score: 181.0 bits (458), Expect = 5.7e-42 Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = 0
BLAST of MS002480 vs. NCBI nr
Match: XP_022152463.1 (S-protein homolog 1-like [Momordica charantia]) HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41 Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of MS002480 vs. NCBI nr
Match: XP_024200376.1 (S-protein homolog 74 [Rosa chinensis] >PRQ31789.1 putative plant self-incompatibility S1 [Rosa chinensis]) HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39 Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of MS002480 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30 Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 0
BLAST of MS002480 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 5.7e-29 Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of MS002480 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11 Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of MS002480 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11 Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0
BLAST of MS002480 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11 Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 0
BLAST of MS002480 vs. ExPASy TrEMBL
Match: A0A6J1CQW3 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 5.5e-67 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of MS002480 vs. ExPASy TrEMBL
Match: A0A6J1CQ33 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013534 PE=3 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43 Identity = 73/112 (65.18%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of MS002480 vs. ExPASy TrEMBL
Match: A0A6J1DEX4 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 8.0e-42 Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of MS002480 vs. ExPASy TrEMBL
Match: A0A2P6QC93 (S-protein homolog OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0039321 PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39 Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of MS002480 vs. ExPASy TrEMBL
Match: A0A6J1L199 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111498184 PE=3 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39 Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0
BLAST of MS002480 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 ) HSP 1 Score: 133.7 bits (335), Expect = 9.7e-32 Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 0
BLAST of MS002480 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 128.3 bits (321), Expect = 4.1e-30 Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of MS002480 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12 Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0
BLAST of MS002480 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 68.2 bits (165), Expect = 5.0e-12 Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 0
BLAST of MS002480 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 67.8 bits (164), Expect = 6.5e-12 Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|