MS002428 (gene) Bitter gourd (TR) v1

Overview
NameMS002428
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold318: 7737 .. 8078 (+)
RNA-Seq ExpressionMS002428
SyntenyMS002428
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGTAAAAATGGTGAAATGGACAATGAAAAAGATTTTGGGATTAAGAGAGATTGAAGGAAAATTGTTGTTGAGAGAAGAAGAATTACAAATCCAATACAATATATTCAGATGGTGGCCCACAAATAAAGTTTTGCAAGTGTTGACAGACTTTGAAAATGGAGTAAACATCACTTTGTTTGACCAAAAGAGGAGAGAAAAAATTGAGACAAATATGAAATGGGTGCCTGCTGATTACGGGTTCCATATTCAATGGGACATTGAAGGAAAATGGTATGAAGGTGGAGATGAGATTAAGATGTATTGGGATTATCTCAACGATCAATTGTGTTACCTTGTA

mRNA sequence

GAAGAAGTAAAAATGGTGAAATGGACAATGAAAAAGATTTTGGGATTAAGAGAGATTGAAGGAAAATTGTTGTTGAGAGAAGAAGAATTACAAATCCAATACAATATATTCAGATGGTGGCCCACAAATAAAGTTTTGCAAGTGTTGACAGACTTTGAAAATGGAGTAAACATCACTTTGTTTGACCAAAAGAGGAGAGAAAAAATTGAGACAAATATGAAATGGGTGCCTGCTGATTACGGGTTCCATATTCAATGGGACATTGAAGGAAAATGGTATGAAGGTGGAGATGAGATTAAGATGTATTGGGATTATCTCAACGATCAATTGTGTTACCTTGTA

Coding sequence (CDS)

GAAGAAGTAAAAATGGTGAAATGGACAATGAAAAAGATTTTGGGATTAAGAGAGATTGAAGGAAAATTGTTGTTGAGAGAAGAAGAATTACAAATCCAATACAATATATTCAGATGGTGGCCCACAAATAAAGTTTTGCAAGTGTTGACAGACTTTGAAAATGGAGTAAACATCACTTTGTTTGACCAAAAGAGGAGAGAAAAAATTGAGACAAATATGAAATGGGTGCCTGCTGATTACGGGTTCCATATTCAATGGGACATTGAAGGAAAATGGTATGAAGGTGGAGATGAGATTAAGATGTATTGGGATTATCTCAACGATCAATTGTGTTACCTTGTA

Protein sequence

EEVKMVKWTMKKILGLREIEGKLLLREEELQIQYNIFRWWPTNKVLQVLTDFENGVNITLFDQKRREKIETNMKWVPADYGFHIQWDIEGKWYEGGDEIKMYWDYLNDQLCYLV
Homology
BLAST of MS002428 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-12
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 8   WTMKKILGLREIEGKLLLRE--EELQIQYNIFRWWPTNKVLQVLTDFENGVNITLFDQKR 67
           WTM K L   ++ G L LRE  E+  I+ N+F WWP +KV  +     + V I L+D   
Sbjct: 5   WTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILYDVNM 64

Query: 68  REKIETNMKWVPADYGFHIQWDIEGKWYEGGDEIKMYWDYLNDQLCYLV 115
            + I+T M+W+     +HI+WDI+ K Y  GD++ M+WD   ++L Y +
Sbjct: 65  DQAIQTTMRWL-GMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKI 112

BLAST of MS002428 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-12
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 0

Query: 7   KWTMKKILGLREIEGKLLLREEEL--QIQYNIFRWWPTNKVLQVLTDFENGVNITLFDQK 66
           +WTM K L   ++ G L LRE+++   I  N+FRWW  +KV  +     N   ITLFD+ 
Sbjct: 4   RWTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLFDEN 63

Query: 67  RREKIETNMKWVPADYGFHIQWDIEGKWYEGGDEIKMYWDYLNDQLCYLV 115
             E + T ++W+     +HI+WD++ K Y  G ++ M WD   ++L Y V
Sbjct: 64  TNEVMHTTIRWLGTP-RYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKV 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575830.16.1e-1237.61hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575832.18.0e-1236.36hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002428.1MS002428.1mRNA