MS002063 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCTGCATCAAGAACAGTGGTTCAGAATCTTCCGTCGGTGGTTCTGAATCTGAGTGAAGAAGATGCATTGTGTTCGATCTGTATGGATCGGATCAGAGTTGGTGAAGAAGCGAAGCAGTTACCGTGTGGCCATGGATTTCATGGTGAGTGTATAAGGCCATGGTTGGAGATTACTGATACTTGGCCTCTTTGCCGCCATGAATTGCCT CCTGCATCAAGAACAGTGGTTCAGAATCTTCCGTCGGTGGTTCTGAATCTGAGTGAAGAAGATGCATTGTGTTCGATCTGTATGGATCGGATCAGAGTTGGTGAAGAAGCGAAGCAGTTACCGTGTGGCCATGGATTTCATGGTGAGTGTATAAGGCCATGGTTGGAGATTACTGATACTTGGCCTCTTTGCCGCCATGAATTGCCT CCTGCATCAAGAACAGTGGTTCAGAATCTTCCGTCGGTGGTTCTGAATCTGAGTGAAGAAGATGCATTGTGTTCGATCTGTATGGATCGGATCAGAGTTGGTGAAGAAGCGAAGCAGTTACCGTGTGGCCATGGATTTCATGGTGAGTGTATAAGGCCATGGTTGGAGATTACTGATACTTGGCCTCTTTGCCGCCATGAATTGCCT PASRTVVQNLPSVVLNLSEEDALCSICMDRIRVGEEAKQLPCGHGFHGECIRPWLEITDTWPLCRHELP Homology
BLAST of MS002063 vs. NCBI nr
Match: XP_022134761.1 (E3 ubiquitin-protein ligase SIRP1-like [Momordica charantia]) HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32 Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of MS002063 vs. NCBI nr
Match: XP_010087330.1 (uncharacterized protein LOC21395864 [Morus notabilis] >XP_024020162.1 uncharacterized protein LOC21395864 [Morus notabilis] >EXB28904.1 E3 ubiquitin-protein ligase RING1 [Morus notabilis]) HSP 1 Score: 103.2 bits (256), Expect = 9.1e-19 Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of MS002063 vs. NCBI nr
Match: PON36160.1 (43kDa postsynaptic protein [Parasponia andersonii]) HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of MS002063 vs. NCBI nr
Match: PON84354.1 (43kDa postsynaptic protein [Trema orientale]) HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of MS002063 vs. NCBI nr
Match: XP_024973313.1 (uncharacterized protein LOC112511781 [Cynara cardunculus var. scolymus] >KVH98488.1 Zinc finger, RING/FYVE/PHD-type [Cynara cardunculus var. scolymus]) HSP 1 Score: 100.5 bits (249), Expect = 5.9e-18 Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0
BLAST of MS002063 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15 Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 0
BLAST of MS002063 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 3.7e-15 Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0
BLAST of MS002063 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 1.4e-14 Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0
BLAST of MS002063 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 1.8e-14 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0
BLAST of MS002063 vs. ExPASy Swiss-Prot
Match: Q5M974 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 2.4e-14 Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
BLAST of MS002063 vs. ExPASy TrEMBL
Match: A0A6J1BYP6 (E3 ubiquitin-protein ligase SIRP1-like OS=Momordica charantia OX=3673 GN=LOC111006957 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 9.1e-33 Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of MS002063 vs. ExPASy TrEMBL
Match: W9QD04 (E3 ubiquitin-protein ligase RING1 OS=Morus notabilis OX=981085 GN=L484_012663 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 4.4e-19 Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of MS002063 vs. ExPASy TrEMBL
Match: A0A2P5AI19 (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_330490 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of MS002063 vs. ExPASy TrEMBL
Match: A0A2P5EFQ9 (43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_198140 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of MS002063 vs. ExPASy TrEMBL
Match: A0A103XX49 (Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_023315 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18 Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0
BLAST of MS002063 vs. TAIR 10
Match: AT5G15820.1 (RING/U-box superfamily protein ) HSP 1 Score: 84.7 bits (208), Expect = 3.1e-17 Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 0
BLAST of MS002063 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein ) HSP 1 Score: 83.6 bits (205), Expect = 6.9e-17 Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 0
BLAST of MS002063 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein ) HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 0
BLAST of MS002063 vs. TAIR 10
Match: AT4G26400.2 (RING/U-box superfamily protein ) HSP 1 Score: 80.5 bits (197), Expect = 5.9e-16 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0
BLAST of MS002063 vs. TAIR 10
Match: AT4G26400.1 (RING/U-box superfamily protein ) HSP 1 Score: 80.5 bits (197), Expect = 5.9e-16 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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