MS001844 (gene) Bitter gourd (TR) v1

Overview


Name	MS001844
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein indeterminate-domain 16
Location	scaffold30: 343288 .. 343791 (-)
RNA-Seq Expression	MS001844
Synteny	MS001844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGAAGATCAGAAGGAGTTGCAGCTCCTCCCGACGCCTCACTCGATGGCATCGTCATCCCACATGTCGTCTCGGGCGGGCGAGTCGTCGTTCCGGTTCCGGTCGACGACGATGTCGGATCCGCTGTTCGAAGGCGGGGGTGCAGGTGCAGGTGCAGCAGGTGCGTCGCTGGACCTGCAGCTGTCGATCAGCGTGAGGCCAATCCGGGCGGCGTCGGAGCTGATGAAGCCGGAGGCGGCGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGGCTGGCGGCGATGGAGAAGGCGTACGCGGAGAGGGTGAGGGAGCTGACGAAGCGGGAGATAGAATTGGCGCAGACGGAATTCGCGAGGGCGCGGCAGATGTGGGAGAGGGCTCGCGAAGAGGTTGAAAAGGCGGAGCGTATGAAAGAGAGAGCCACGCGCCAAATGGATTCTACGTGCATGGAGATCACCTGCCAATCCTGCCGCCAGAGGTTTCGGCCTTCC

mRNA sequence

ATGGAAGACGAAGATCAGAAGGAGTTGCAGCTCCTCCCGACGCCTCACTCGATGGCATCGTCATCCCACATGTCGTCTCGGGCGGGCGAGTCGTCGTTCCGGTTCCGGTCGACGACGATGTCGGATCCGCTGTTCGAAGGCGGGGGTGCAGGTGCAGGTGCAGCAGGTGCGTCGCTGGACCTGCAGCTGTCGATCAGCGTGAGGCCAATCCGGGCGGCGTCGGAGCTGATGAAGCCGGAGGCGGCGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGGCTGGCGGCGATGGAGAAGGCGTACGCGGAGAGGGTGAGGGAGCTGACGAAGCGGGAGATAGAATTGGCGCAGACGGAATTCGCGAGGGCGCGGCAGATGTGGGAGAGGGCTCGCGAAGAGGTTGAAAAGGCGGAGCGTATGAAAGAGAGAGCCACGCGCCAAATGGATTCTACGTGCATGGAGATCACCTGCCAATCCTGCCGCCAGAGGTTTCGGCCTTCC

Coding sequence (CDS)

ATGGAAGACGAAGATCAGAAGGAGTTGCAGCTCCTCCCGACGCCTCACTCGATGGCATCGTCATCCCACATGTCGTCTCGGGCGGGCGAGTCGTCGTTCCGGTTCCGGTCGACGACGATGTCGGATCCGCTGTTCGAAGGCGGGGGTGCAGGTGCAGGTGCAGCAGGTGCGTCGCTGGACCTGCAGCTGTCGATCAGCGTGAGGCCAATCCGGGCGGCGTCGGAGCTGATGAAGCCGGAGGCGGCGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGGCTGGCGGCGATGGAGAAGGCGTACGCGGAGAGGGTGAGGGAGCTGACGAAGCGGGAGATAGAATTGGCGCAGACGGAATTCGCGAGGGCGCGGCAGATGTGGGAGAGGGCTCGCGAAGAGGTTGAAAAGGCGGAGCGTATGAAAGAGAGAGCCACGCGCCAAATGGATTCTACGTGCATGGAGATCACCTGCCAATCCTGCCGCCAGAGGTTTCGGCCTTCC

Protein sequence

MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASLDLQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

Homology

[Close]

BLAST of MS001844 vs. NCBI nr
Match: XP_022135320.1 (protein indeterminate-domain 16 [Momordica charantia])

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASLD 60
           MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTT SDPLFEGGGAGAGAAGASLD
Sbjct: 1   MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTXSDPLFEGGGAGAGAAGASLD 60

Query: 61  LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE 120
           LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE
Sbjct: 61  LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE 120

Query: 121 FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 169
           FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of MS001844 vs. NCBI nr
Match: XP_038878928.1 (protein indeterminate-domain 16 [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 7.0e-57
Identity = 142/179 (79.33%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFRS       FE  G G      S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDA-----FEAAGPG------SV 60

Query: 61  DLQLSISVRPIRAAS-------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERVREL 120
           DLQLSIS+RPIR A+       E+MKPEAA   EALKWQAAEQIRLAAMEKAYAERVREL
Sbjct: 61  DLQLSISLRPIRPAAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVREL 120

Query: 121 TKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 169
           TKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 TKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of MS001844 vs. NCBI nr
Match: XP_008464429.1 (PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 9.2e-57
Identity = 143/182 (78.57%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFR    SDP FE G      +G S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFR----SDP-FEAG------SGGSV 60

Query: 61  DLQLSISVRPIRAAS----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERV 120
           DLQLSIS+RPIR  +          E+MKPEAA   EALKWQAAEQIRLAAMEKAYAERV
Sbjct: 61  DLQLSISLRPIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV 120

Query: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 169
           RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 171

[Close]

BLAST of MS001844 vs. NCBI nr
Match: KAA0057771.1 (protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-56
Identity = 142/182 (78.02%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFR    SDP FE G      +G S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFR----SDP-FEAG------SGGSV 60

Query: 61  DLQLSISVRPIRAAS----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERV 120
           DLQLSIS+RPIR  +          E+MKPEAA   EALKWQAAEQIRLAA+EKAYAERV
Sbjct: 61  DLQLSISLRPIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERV 120

Query: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 169
           RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 171

[Close]

BLAST of MS001844 vs. NCBI nr
Match: XP_004138047.1 (protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 3.5e-56
Identity = 142/185 (76.76%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMASS--SHMSSRAGE-SSFRFRSTTMSDPLFEGGGAGAGAAGA 60
           MEDEDQKELQLLPTPHS+ASS  SH+SSR  + SS RFR    SDPLFE G      +G 
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFR----SDPLFEAG------SGG 60

Query: 61  SLDLQLSISVRPIRAAS-----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYA 120
           S+DLQLSIS+RPIR  +           E+MKPEAA   +ALKWQAAEQIRLAAMEKAYA
Sbjct: 61  SVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYA 120

Query: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 169
           ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ
Sbjct: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 175

[Close]

BLAST of MS001844 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 89  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 148
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 149 QMDSTCMEITCQSCRQRFR 167
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of MS001844 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 36  RSTTMSDPLFEGGGAGAGAAGASLDLQLSISVRPIRAASELMKPEAAEALKWQAAEQIRL 95
           R +    P F      + A   SL+LQLSI +    A +   +       K +A E+ R 
Sbjct: 212 RPSNQHSPAFAYPFNASSAPFESLELQLSIGMARTSAQARHNEKRETSLTKERANEEAR- 271

Query: 96  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCME 155
                  AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E A +++++T ME
Sbjct: 272 ------KAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATMME 331

Query: 156 ITCQSCRQRFR 167
           ITC SC+Q F+
Sbjct: 332 ITCHSCKQLFQ 335

[Close]

BLAST of MS001844 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 104 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 163
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 164 RFR 167
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of MS001844 vs. ExPASy TrEMBL
Match: A0A6J1C0T1 (protein indeterminate-domain 16 OS=Momordica charantia OX=3673 GN=LOC111007311 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASLD 60
           MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTT SDPLFEGGGAGAGAAGASLD
Sbjct: 1   MEDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTXSDPLFEGGGAGAGAAGASLD 60

Query: 61  LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE 120
           LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE
Sbjct: 61  LQLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTE 120

Query: 121 FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 169
           FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 FARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of MS001844 vs. ExPASy TrEMBL
Match: A0A5D3BFD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00530 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.4e-57
Identity = 143/182 (78.57%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFR    SDP FE G      +G S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFR----SDP-FEAG------SGGSV 60

Query: 61  DLQLSISVRPIRAAS----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERV 120
           DLQLSIS+RPIR  +          E+MKPEAA   EALKWQAAEQIRLAAMEKAYAERV
Sbjct: 61  DLQLSISLRPIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV 120

Query: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 169
           RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 171

[Close]

BLAST of MS001844 vs. ExPASy TrEMBL
Match: A0A1S3CN02 (protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.4e-57
Identity = 143/182 (78.57%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFR    SDP FE G      +G S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFR----SDP-FEAG------SGGSV 60

Query: 61  DLQLSISVRPIRAAS----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERV 120
           DLQLSIS+RPIR  +          E+MKPEAA   EALKWQAAEQIRLAAMEKAYAERV
Sbjct: 61  DLQLSISLRPIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV 120

Query: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 169
           RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 171

[Close]

BLAST of MS001844 vs. ExPASy TrEMBL
Match: A0A5A7UWD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00540 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 142/182 (78.02%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMA-SSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASL 60
           MEDEDQKELQLLPTPHS+A SSSHMSSR  +SS RFR    SDP FE G      +G S+
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFR----SDP-FEAG------SGGSV 60

Query: 61  DLQLSISVRPIRAAS----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYAERV 120
           DLQLSIS+RPIR  +          E+MKPEAA   EALKWQAAEQIRLAA+EKAYAERV
Sbjct: 61  DLQLSISLRPIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERV 120

Query: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 169
           RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 RELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 171

[Close]

BLAST of MS001844 vs. ExPASy TrEMBL
Match: A0A0A0LRS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 142/185 (76.76%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSMASS--SHMSSRAGE-SSFRFRSTTMSDPLFEGGGAGAGAAGA 60
           MEDEDQKELQLLPTPHS+ASS  SH+SSR  + SS RFR    SDPLFE G      +G 
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFR----SDPLFEAG------SGG 60

Query: 61  SLDLQLSISVRPIRAAS-----------ELMKPEAA---EALKWQAAEQIRLAAMEKAYA 120
           S+DLQLSIS+RPIR  +           E+MKPEAA   +ALKWQAAEQIRLAAMEKAYA
Sbjct: 61  SVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYA 120

Query: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 169
           ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ
Sbjct: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 175

[Close]

BLAST of MS001844 vs. TAIR 10
Match: AT3G48550.1 (BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-34
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 2   EDEDQKELQLLPTPHSMASSSHMSSRAGESSFRFRSTTMSDPLFEGGGAGAGAAGASLDL 61
           + +  KELQLLP+P S  S             + R T ++          +      LDL
Sbjct: 4   QQDHHKELQLLPSPPSTESPVR----------KHRPTVITTDHHNNHHRSSSMIHHDLDL 63

Query: 62  QLSISVRPIRAASELMKPEAAEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEF 121
           +LSIS+  I  A EL      EALKWQAAEQIRLAA+EKAYAERVRELT+RE+E+AQ+EF
Sbjct: 64  KLSISLSSISTAEELPN-GGVEALKWQAAEQIRLAAIEKAYAERVRELTRREMEMAQSEF 123

Query: 122 ARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 168
           ARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 ARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]

BLAST of MS001844 vs. TAIR 10
Match: AT2G01940.1 (C2H2-like zinc finger protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 89  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 148
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 149 QMDSTCMEITCQSCRQRFR 167
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of MS001844 vs. TAIR 10
Match: AT2G01940.2 (C2H2-like zinc finger protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 89  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 148
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 246 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 305

Query: 149 QMDSTCMEITCQSCRQRFR 167
           ++ ST M++TCQ+C+ +F+
Sbjct: 306 KISSTIMQVTCQTCKGQFQ 324

[Close]

BLAST of MS001844 vs. TAIR 10
Match: AT2G01940.3 (C2H2-like zinc finger protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 89  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 148
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 149 QMDSTCMEITCQSCRQRFR 167
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]

BLAST of MS001844 vs. TAIR 10
Match: AT1G25250.1 (indeterminate(ID)-domain 16 )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 36  RSTTMSDPLFEGGGAGAGAAGASLDLQLSISVRPIRAASELMKPEAAEALKWQAAEQIRL 95
           R +    P F      + A   SL+LQLSI +    A +   +       K +A E+ R 
Sbjct: 212 RPSNQHSPAFAYPFNASSAPFESLELQLSIGMARTSAQARHNEKRETSLTKERANEEAR- 271

Query: 96  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCME 155
                  AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E A +++++T ME
Sbjct: 272 ------KAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATMME 331

Query: 156 ITCQSCRQRFR 167
           ITC SC+Q F+
Sbjct: 332 ITCHSCKQLFQ 335

The following BLAST results are available for this feature:

BLAST of MS001844 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135320.1	5.0e-79	99.40	protein indeterminate-domain 16 [Momordica charantia]	[more]
XP_038878928.1	7.0e-57	79.33	protein indeterminate-domain 16 [Benincasa hispida]	[more]
XP_008464429.1	9.2e-57	78.57	PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein in...	[more]
KAA0057771.1	2.7e-56	78.02	protein indeterminate-domain 16 [Cucumis melo var. makuwa]	[more]
XP_004138047.1	3.5e-56	76.76	protein indeterminate-domain 16 [Cucumis sativus]	[more]

BLAST of MS001844 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IPE3	1.7e-08	41.77	Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5...	[more]
Q9FRH4	1.8e-07	33.59	Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV...	[more]
Q9C9X7	1.5e-06	44.44	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]

BLAST of MS001844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0T1	2.4e-79	99.40	protein indeterminate-domain 16 OS=Momordica charantia OX=3673 GN=LOC111007311 P...	[more]
A0A5D3BFD1	4.4e-57	78.57	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CN02	4.4e-57	78.57	protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=...	[more]
A0A5A7UWD1	1.3e-56	78.02	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0LRS8	1.7e-56	76.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1	[more]

BLAST of MS001844 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48550.1	4.0e-34	53.61	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:...	[more]
AT2G01940.1	1.2e-09	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.2	1.2e-09	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.3	1.2e-09	41.77	C2H2-like zinc finger protein	[more]
AT1G25250.1	1.3e-08	33.59	indeterminate(ID)-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..35
None	No IPR available	PANTHER	PTHR34946:SF2	OS03G0310200 PROTEIN	coord: 1..167
IPR039288	Zinc finger protein SHOOT GRAVITROPISM 5-like	PANTHER	PTHR34946	OS03G0310200 PROTEIN	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001844.1	MS001844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism