MS000606 (gene) Bitter gourd (TR) v1

Overview


Name	MS000606
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II protein D1
Location	scaffold93: 303493 .. 303608 (-)
RNA-Seq Expression	MS000606
Synteny	MS000606

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGATATCGGAAGTTGCTTCCCCTGATGAATGGTTATACAAAGGTGGTCCTTATGAGCTATTGTTCTATTCTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGCACCTC

mRNA sequence

CCGATATCGGAAGTTGCTTCCCCTGATGAATGGTTATACAAAGGTGGTCCTTATGAGATTGTTCTATTCTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGCACCTC

Coding sequence (CDS)

CCGATATCGGAAGTTGCTTCCCCTGATGAATGGTTATACAAAGGTGGTCCTTATGAGATTGTTCTATTCTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGCACCTC

Protein sequence

PISEVASPDEWLYKGGPYEIVLFFLLGVACYMGREWHL

Homology

[Close]

BLAST of MS000606 vs. NCBI nr
Match: QBP05290.1 (photosystem II protein D1, partial [Selaginella chrysocaulos] >QBP05298.1 photosystem II protein D1, partial [Selaginella labordei])

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
          PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 19 PIWEAASPDEWLYNGGPYELIVLHFLLGVACYMGREWEL 57

[Close]

BLAST of MS000606 vs. NCBI nr
Match: RZC83510.1 (hypothetical protein C5167_046296 [Papaver somniferum])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI EVAS DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 95  PIWEVASVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. NCBI nr
Match: RZC92521.1 (hypothetical protein C5167_041860 [Papaver somniferum])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
          PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 59 PIWEVTSVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 97

[Close]

BLAST of MS000606 vs. NCBI nr
Match: RZC81255.1 (hypothetical protein C5167_043827 [Papaver somniferum])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 146 PIWEVTSVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 184

[Close]

BLAST of MS000606 vs. NCBI nr
Match: KAF6139726.1 (hypothetical protein GIB67_006674 [Kingdonia uniflora])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy Swiss-Prot
Match: Q3V554 (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy Swiss-Prot
Match: Q85C23 (Photosystem II protein D1 OS=Adiantum capillus-veneris OX=13818 GN=psbA PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-11
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy TrEMBL
Match: A0A482IEU6 (Photosystem II protein D1 (Fragment) OS=Selaginella labordei OX=1353966 GN=psbA PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
          PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 19 PIWEAASPDEWLYNGGPYELIVLHFLLGVACYMGREWEL 57

[Close]

BLAST of MS000606 vs. ExPASy TrEMBL
Match: A0A482IBB2 (Photosystem II protein D1 (Fragment) OS=Selaginella chrysocaulos OX=1353960 GN=psbA PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
          PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 19 PIWEAASPDEWLYNGGPYELIVLHFLLGVACYMGREWEL 57

[Close]

BLAST of MS000606 vs. ExPASy TrEMBL
Match: A0A4Y7LFU4 (32 kDa thylakoid membrane protein OS=Papaver somniferum OX=3469 GN=C5167_046296 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI EVAS DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 95  PIWEVASVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 133

[Close]

BLAST of MS000606 vs. ExPASy TrEMBL
Match: A0A4Y7LAP4 (Photosystem II protein D1 OS=Papaver somniferum OX=3469 GN=C5167_043827 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 146 PIWEVTSVDEWLYNGGPYELIVLYFLLGVACYMGREWEL 184

[Close]

BLAST of MS000606 vs. ExPASy TrEMBL
Match: A0A4Y7LAH5 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_043764 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
          PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Sbjct: 59 PIWEVTSVDEWLYNGGPYEIIVLYFLLGVACYMGREWEL 97

[Close]

BLAST of MS000606 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 68.9 bits (167), Expect = 9.7e-13
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL 39
           PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Sbjct: 95  PIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWEL 133

The following BLAST results are available for this feature:

BLAST of MS000606 vs. NCBI nr


Match Name	E-value	Identity	Description
QBP05290.1	9.5e-10	84.62	photosystem II protein D1, partial [Selaginella chrysocaulos] >QBP05298.1 photos...	[more]
RZC83510.1	1.2e-09	84.62	hypothetical protein C5167_046296 [Papaver somniferum]	[more]
RZC92521.1	3.6e-09	82.05	hypothetical protein C5167_041860 [Papaver somniferum]	[more]
RZC81255.1	3.6e-09	82.05	hypothetical protein C5167_043827 [Papaver somniferum]	[more]
KAF6139726.1	3.6e-09	82.05	hypothetical protein GIB67_006674 [Kingdonia uniflora]	[more]

BLAST of MS000606 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V554	1.4e-11	82.05	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
Q85C23	1.4e-11	82.05	Photosystem II protein D1 OS=Adiantum capillus-veneris OX=13818 GN=psbA PE=2 SV=...	[more]
A4QJ96	1.4e-11	82.05	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
A4QJI0	1.4e-11	82.05	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
A1E9Y8	1.4e-11	82.05	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]

BLAST of MS000606 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A482IEU6	4.6e-10	84.62	Photosystem II protein D1 (Fragment) OS=Selaginella labordei OX=1353966 GN=psbA ...	[more]
A0A482IBB2	4.6e-10	84.62	Photosystem II protein D1 (Fragment) OS=Selaginella chrysocaulos OX=1353960 GN=p...	[more]
A0A4Y7LFU4	6.0e-10	84.62	32 kDa thylakoid membrane protein OS=Papaver somniferum OX=3469 GN=C5167_046296 ...	[more]
A0A4Y7LAP4	1.7e-09	82.05	Photosystem II protein D1 OS=Papaver somniferum OX=3469 GN=C5167_043827 PE=3 SV=...	[more]
A0A4Y7LAH5	1.7e-09	82.05	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_043764 PE=3 SV=1	[more]

BLAST of MS000606 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	9.7e-13	82.05	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33149:SF12	PHOTOSYSTEM II PROTEIN D1	coord: 1..38
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..38
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000606.1	MS000606.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity