MS000577 (gene) Bitter gourd (TR) v1

Overview
NameMS000577
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold64: 1048830 .. 1049138 (-)
RNA-Seq ExpressionMS000577
SyntenyMS000577
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGATTTTCAACAACATCACCTCCACTAAAACAAATCTTTTGATTAAAGGAATAGTAACTGACCCTTGGTGTGTTTTTTGCAGGACGAAAGAGGAGACAAACTGCCATATATTTTGGAATTGTCAGGTAACAGAAGACATCTGGGCTAAATACTTTAAGTCTAACTTAGATTTATGGTGTGTTGACAGGAGCAACTGGAGCGTACAAGACTACTGGAGTTGGCTGGTAGAGCACTCTACAGAAGGAGATATGACAAATATTTTGACAATCATGTGGCAAATTTGGGAATGCAGGAATAGGGTGGTGTTC

mRNA sequence

AAGATTTTCAACAACATCACCTCCACTAAAACAAATCTTTTGATTAAAGGAATAGTAACTGACCCTTGGTGTGTTTTTTGCAGGACGAAAGAGGAGACAAACTGCCATATATTTTGGAATTGTCAGGTAACAGAAGACATCTGGGCTAAATACTTTAAGTCTAACTTAGATTTATGGTGTGTTGACAGGAGCAACTGGAGCGTACAAGACTACTGGAGTTGGCTGGTAGAGCACTCTACAGAAGGAGATATGACAAATATTTTGACAATCATGTGGCAAATTTGGGAATGCAGGAATAGGGTGGTGTTC

Coding sequence (CDS)

AAGATTTTCAACAACATCACCTCCACTAAAACAAATCTTTTGATTAAAGGAATAGTAACTGACCCTTGGTGTGTTTTTTGCAGGACGAAAGAGGAGACAAACTGCCATATATTTTGGAATTGTCAGGTAACAGAAGACATCTGGGCTAAATACTTTAAGTCTAACTTAGATTTATGGTGTGTTGACAGGAGCAACTGGAGCGTACAAGACTACTGGAGTTGGCTGGTAGAGCACTCTACAGAAGGAGATATGACAAATATTTTGACAATCATGTGGCAAATTTGGGAATGCAGGAATAGGGTGGTGTTC

Protein sequence

KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF
Homology
BLAST of MS000577 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 8.0e-11
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 28  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNI 87
           R KEET  HI W C+V +DIW        + + +DR+NW+ ++YW WL++ + E +    
Sbjct: 131 RKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWEWLMDKAGEEERRRS 190

Query: 88  LTIMWQIWECRNRVVF 104
           + I  QIWE RN+ +F
Sbjct: 191 MIIACQIWEMRNKSIF 206

BLAST of MS000577 vs. NCBI nr
Match: XP_042984282.1 (uncharacterized protein LOC122313374 [Carya illinoinensis])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 1   KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
           K  NN   TK NL  + +  DP C  C  KEET CH+ WNC    D+WA+   S +  W 
Sbjct: 454 KAINNCLPTKWNLYKRRVTKDPLCPICVNKEETVCHVLWNCPAAVDVWAE-VNSPVQKWP 513

Query: 61  VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
              ++  +   W+ +VE   E ++  I T+M  IW  RN +VF
Sbjct: 514 TGETD--LGQLWNKVVERCGEDEVVLIATVMRNIWLRRNSLVF 553

BLAST of MS000577 vs. NCBI nr
Match: XP_042942906.1 (uncharacterized protein LOC122277092 [Carya illinoinensis])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 1    KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
            K  NN   TK NL  + +  DP C  C  KEET CH+ WNC    D+WA+   S +  W 
Sbjct: 941  KAINNCLPTKWNLYKRRVTKDPLCPICVNKEETVCHVLWNCPAAVDVWAE-VDSPVQKWP 1000

Query: 61   VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
               ++  +   W+ +VE   E ++  I T+M  IW  RN +VF
Sbjct: 1001 TGETD--LGQLWNKVVERCGEDEVVLIATVMRNIWLRRNSLVF 1040

BLAST of MS000577 vs. NCBI nr
Match: XP_035540219.1 (uncharacterized protein LOC118344207 [Juglans regia])

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-09
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 1   KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
           K  NN+ +T+ NLL K IV D WC  C  +EET  H+ W C  T D+W++  K+ +  W 
Sbjct: 102 KAGNNLLATRKNLLSKRIVEDAWCPICLQEEETVMHVLWQCHATNDVWSEAIKA-VQKWR 161

Query: 61  VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
           V   +  +      LV+  T+  M   + IM  +W  RN  VF
Sbjct: 162 VGEGD--LLGLLEELVKKLTQAKMEETIAIMRGLWLRRNTFVF 201

BLAST of MS000577 vs. NCBI nr
Match: XP_041020404.1 (uncharacterized protein LOC121262033 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 31/103 (30.10%), Postives = 56/103 (54.37%), Query Frame = 0

Query: 1   KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
           K+ N + + K NL  K I+ +P+   C+ +EET  H+ W C +  D+W++ F S +  W 
Sbjct: 19  KVGNELLAFKRNLFQKKIIENPYYPICKKEEETTMHVLWQCPIASDVWSE-FHSVVQKW- 78

Query: 61  VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
            +++   +   W  L+E  ++ +M  I T+M  +W  RN  +F
Sbjct: 79  -NKNEDDLLSLWERLMERVSKVEMEEIATVMRSLWLRRNEFIF 118

BLAST of MS000577 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 28  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNI 87
           R KEET  HI W C+V +DIW        + + +DR+NW+ ++YW WL++ + E +    
Sbjct: 131 RKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWEWLMDKAGEEERRRS 190

Query: 88  LTIMWQIWECRNRVVF 104
           + I  QIWE RN+ +F
Sbjct: 191 MIIACQIWEMRNKSIF 206

BLAST of MS000577 vs. ExPASy TrEMBL
Match: A0A6P9DY88 (uncharacterized protein LOC118344207 OS=Juglans regia OX=51240 GN=LOC118344207 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 1   KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
           K  NN+ +T+ NLL K IV D WC  C  +EET  H+ W C  T D+W++  K+ +  W 
Sbjct: 102 KAGNNLLATRKNLLSKRIVEDAWCPICLQEEETVMHVLWQCHATNDVWSEAIKA-VQKWR 161

Query: 61  VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
           V   +  +      LV+  T+  M   + IM  +W  RN  VF
Sbjct: 162 VGEGD--LLGLLEELVKKLTQAKMEETIAIMRGLWLRRNTFVF 201

BLAST of MS000577 vs. ExPASy TrEMBL
Match: A2I5F4 (RNA-directed DNA polymerase (Fragment) OS=Beta vulgaris OX=161934 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 8   STKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSN-- 67
           +T+ NL  K I+++  C FC  +EE++ H+F +C+ T+ IWA    S+L L  VD+ N  
Sbjct: 64  TTRVNLRSKKILSETLCTFCGQEEESDTHLFKDCETTKRIWA---ASSLGLINVDKCNEQ 123

Query: 68  ---WSVQDYWSWLVEHSTEGD-MTNILTIMWQIWECRNRVVF 104
              WS    W +++    + D +   + I+W IW CRN  +F
Sbjct: 124 IVVWSKNWIWYFMMNDIPDNDCVLEFVGILWSIWLCRNNSIF 162

BLAST of MS000577 vs. ExPASy TrEMBL
Match: A0A5B6W6M0 (Ribonuclease H-like superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_011208 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-07
Identity = 28/100 (28.00%), Postives = 51/100 (51.00%), Query Frame = 0

Query: 1   KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWC 60
           K  NN   T+TNL  + +V+   C  C   EET  H+F +C +  DIWA+        W 
Sbjct: 202 KSLNNFLPTQTNLFRRKLVSSTTCPRCSQNEETMEHVFRDCPLVHDIWARLGIG----WT 261

Query: 61  VDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR 101
           +D++ +  +D+   + E+ +   +  ++  +W +W  RN+
Sbjct: 262 LDQNQFQFKDWIKGIFENQSNHKVRTVMCALWAVWTARNK 297

BLAST of MS000577 vs. ExPASy TrEMBL
Match: A0A7C8ZSU5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 34/100 (34.00%), Postives = 51/100 (51.00%), Query Frame = 0

Query: 5   NITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKY-FKSNLDLWCVDR 64
           +I  T+ NL  KG+  D +C FC    ET  HIF +C V +DIWAK  F+ N++     R
Sbjct: 10  DILPTRVNLFRKGVNVDVYCPFCGEDYETQTHIFLDCLVAKDIWAKSPFRLNIN----GR 69

Query: 65  SNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF 104
              +  D+  +L +   +       T +W IW  RN+ +F
Sbjct: 70  PQKNFVDWCFYLCDGLDDETRGLFFTFLWVIWNSRNKWIF 105

BLAST of MS000577 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.7e-07
Identity = 27/96 (28.12%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 9   TKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSV 68
           TK  ++  G +  P C+FC T +ET  H+F++C+   ++W  YF S + ++         
Sbjct: 70  TKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWI-YFTSRVHVF----PPLLF 129

Query: 69  QDYWSWLVEHSTEGDMTNILTI-----MWQIWECRN 100
           +D   WL     + ++T IL +     ++ IW+ RN
Sbjct: 130 EDGIRWLKNPCQDKNVTTILRLSHHASVYTIWKERN 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154990.18.0e-1139.47uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_042984282.11.8e-1036.89uncharacterized protein LOC122313374 [Carya illinoinensis][more]
XP_042942906.12.3e-1036.89uncharacterized protein LOC122277092 [Carya illinoinensis][more]
XP_035540219.15.7e-0935.92uncharacterized protein LOC118344207 [Juglans regia][more]
XP_041020404.12.2e-0830.10uncharacterized protein LOC121262033 [Juglans microcarpa x Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL643.9e-1139.47uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6P9DY882.8e-0935.92uncharacterized protein LOC118344207 OS=Juglans regia OX=51240 GN=LOC118344207 P... [more]
A2I5F41.8e-0834.31RNA-directed DNA polymerase (Fragment) OS=Beta vulgaris OX=161934 PE=4 SV=1[more]
A0A5B6W6M04.4e-0728.00Ribonuclease H-like superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_... [more]
A0A7C8ZSU55.8e-0734.00Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G02520.19.7e-0728.13RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 4..48
e-value: 9.8E-7
score: 29.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000577.1MS000577.1mRNA