MS000565 (gene) Bitter gourd (TR) v1

Overview


Name	MS000565
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein PATRONUS 1-like isoform X2
Location	scaffold64: 750851 .. 751135 (-)
RNA-Seq Expression	MS000565
Synteny	MS000565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT

mRNA sequence

GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT

Coding sequence (CDS)

GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT

Protein sequence

ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLHDHDKCIEAQRLPVLASYLDLVLPGHGKLLNVEDKI

Homology

[Close]

BLAST of MS000565 vs. NCBI nr
Match: XP_022148866.1 (protein PATRONUS 1-like isoform X1 [Momordica charantia] >XP_022148867.1 protein PATRONUS 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           AD KGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQE PIRKKERAKEEIDVAGERFLH
Sbjct: 27  ADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEVPIRKKERAKEEIDVAGERFLH 86

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVE 93
           DHDKCIEAQRLPVLASYLDLVLPGH  L  VE
Sbjct: 87  DHDKCIEAQRLPVLASYLDLVLPGHDSLPKVE 118

[Close]

BLAST of MS000565 vs. NCBI nr
Match: XP_022148868.1 (protein PATRONUS 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           AD KGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQE PIRKKERAKEEIDVAGERFLH
Sbjct: 26  ADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEVPIRKKERAKEEIDVAGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVE 93
           DHDKCIEAQRLPVLASYLDLVLPGH  L  VE
Sbjct: 86  DHDKCIEAQRLPVLASYLDLVLPGHDSLPKVE 117

[Close]

BLAST of MS000565 vs. NCBI nr
Match: XP_023530886.1 (protein PATRONUS 1-like [Cucurbita pepo subsp. pepo] >XP_023530888.1 protein PATRONUS 1-like [Cucurbita pepo subsp. pepo] >XP_023530889.1 protein PATRONUS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKS+   QEAP+RK+ERAKEEIDVAGERFLH
Sbjct: 26  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKST-CRQEAPLRKQERAKEEIDVAGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  +   YLDLVLPGH  L  V
Sbjct: 86  DHDKCVDARKATMSPFYLDLVLPGHDSLSKV 114

[Close]

BLAST of MS000565 vs. NCBI nr
Match: XP_022928585.1 (protein PATRONUS 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-26
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKSS   Q+AP+RK+ERAKEEIDV GERFLH
Sbjct: 73  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKSS-CRQDAPLRKQERAKEEIDVGGERFLH 132

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  + A YLDL+LPGH  L  V
Sbjct: 133 DHDKCVDARKATMSAFYLDLLLPGHDSLSKV 161

[Close]

BLAST of MS000565 vs. NCBI nr
Match: XP_022973829.1 (protein PATRONUS 1-like [Cucurbita maxima] >XP_022973838.1 protein PATRONUS 1-like [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-26
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKS+   Q+AP+RK+ERAKEEIDV GERFLH
Sbjct: 26  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKST-CRQDAPLRKQERAKEEIDVGGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  + A YLDLVLPGH  L  V
Sbjct: 86  DHDKCVDARKATMSAFYLDLVLPGHDSLSKV 114

[Close]

BLAST of MS000565 vs. ExPASy Swiss-Prot
Match: Q94CK6 (Protein PATRONUS 2 OS=Arabidopsis thaliana OX=3702 GN=PANS2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           A GKGKSS    KK  A    RKAL+DI+NKS +  Q +   +K+    + D+A E FLH
Sbjct: 27  AAGKGKSSLAAPKKNGAGFGSRKALHDITNKSKLQPQASSTTRKDVEGVDFDIAKEGFLH 86

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVEDKI 96
           DH KCIE Q+     SY    +  HG   N+++ +
Sbjct: 87  DHSKCIEEQQQDQWDSYFSEHIILHGHETNIKEGV 121

[Close]

BLAST of MS000565 vs. ExPASy Swiss-Prot
Match: Q9LJG6 (Protein PATRONUS 1 OS=Arabidopsis thaliana OX=3702 GN=PANS1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKER-----AKEEIDVAG 60
           A  K K + +  KK    G  RKALNDI+NKS I H +A    K +     A +EID+AG
Sbjct: 28  ASVKSKGTVLGQKK---PGGARKALNDITNKSGI-HAKAAASSKNKQIASAAVKEIDIAG 87

Query: 61  ERFLHDHDKCIEAQRLPVLASY-LDLVLPGHG 87
           ERFLHDH KCI+ Q+      Y  DL+L  HG
Sbjct: 88  ERFLHDHSKCIKEQQNLWDDHYSADLMLLHHG 115

[Close]

BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1D672 (protein PATRONUS 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           AD KGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQE PIRKKERAKEEIDVAGERFLH
Sbjct: 27  ADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEVPIRKKERAKEEIDVAGERFLH 86

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVE 93
           DHDKCIEAQRLPVLASYLDLVLPGH  L  VE
Sbjct: 87  DHDKCIEAQRLPVLASYLDLVLPGHDSLPKVE 118

[Close]

BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1D5A5 (protein PATRONUS 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           AD KGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQE PIRKKERAKEEIDVAGERFLH
Sbjct: 26  ADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEVPIRKKERAKEEIDVAGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVE 93
           DHDKCIEAQRLPVLASYLDLVLPGH  L  VE
Sbjct: 86  DHDKCIEAQRLPVLASYLDLVLPGHDSLPKVE 117

[Close]

BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1IFS7 (protein PATRONUS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472376 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKS+   Q+AP+RK+ERAKEEIDV GERFLH
Sbjct: 26  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKST-CRQDAPLRKQERAKEEIDVGGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  + A YLDLVLPGH  L  V
Sbjct: 86  DHDKCVDARKATMSAFYLDLVLPGHDSLSKV 114

[Close]

BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1EKC8 (protein PATRONUS 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKSS   Q+AP+RK+ERAKEEIDV GERFLH
Sbjct: 26  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKSS-CRQDAPLRKQERAKEEIDVGGERFLH 85

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  + A YLDL+LPGH  L  V
Sbjct: 86  DHDKCVDARKATMSAFYLDLLLPGHDSLSKV 114

[Close]

BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1ES26 (protein PATRONUS 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           ADG GKSSKIIHKKG+ AGSGRKALNDI+NKSS   Q+AP+RK+ERAKEEIDV GERFLH
Sbjct: 73  ADGNGKSSKIIHKKGI-AGSGRKALNDITNKSS-CRQDAPLRKQERAKEEIDVGGERFLH 132

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNV 92
           DHDKC++A++  + A YLDL+LPGH  L  V
Sbjct: 133 DHDKCVDARKATMSAFYLDLLLPGHDSLSKV 161

[Close]

BLAST of MS000565 vs. TAIR 10
Match: AT5G12360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-12
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLH 60
           A GKGKSS    KK  A    RKAL+DI+NKS +  Q +   +K+    + D+A E FLH
Sbjct: 27  AAGKGKSSLAAPKKNGAGFGSRKALHDITNKSKLQPQASSTTRKDVEGVDFDIAKEGFLH 86

Query: 61  DHDKCIEAQRLPVLASYLDLVLPGHGKLLNVEDKI 96
           DH KCIE Q+     SY    +  HG   N+++ +
Sbjct: 87  DHSKCIEEQQQDQWDSYFSEHIILHGHETNIKEGV 121

[Close]

BLAST of MS000565 vs. TAIR 10
Match: AT3G14190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKER-----AKEEIDVAG 60
           A  K K + +  KK    G  RKALNDI+NKS I H +A    K +     A +EID+AG
Sbjct: 28  ASVKSKGTVLGQKK---PGGARKALNDITNKSGI-HAKAAASSKNKQIASAAVKEIDIAG 87

Query: 61  ERFLHDHDKCIEAQRLPVLASY-LDLVLPGHG 87
           ERFLHDH KCI+ Q+      Y  DL+L  HG
Sbjct: 88  ERFLHDHSKCIKEQQNLWDDHYSADLMLLHHG 115

The following BLAST results are available for this feature:

BLAST of MS000565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148866.1	7.1e-38	93.48	protein PATRONUS 1-like isoform X1 [Momordica charantia] >XP_022148867.1 protein...	[more]
XP_022148868.1	7.1e-38	93.48	protein PATRONUS 1-like isoform X2 [Momordica charantia]	[more]
XP_023530886.1	2.8e-26	73.63	protein PATRONUS 1-like [Cucurbita pepo subsp. pepo] >XP_023530888.1 protein PAT...	[more]
XP_022928585.1	4.7e-26	72.53	protein PATRONUS 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022973829.1	4.7e-26	72.53	protein PATRONUS 1-like [Cucurbita maxima] >XP_022973838.1 protein PATRONUS 1-li...	[more]

BLAST of MS000565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK6	1.3e-10	41.05	Protein PATRONUS 2 OS=Arabidopsis thaliana OX=3702 GN=PANS2 PE=2 SV=1	[more]
Q9LJG6	2.7e-08	46.74	Protein PATRONUS 1 OS=Arabidopsis thaliana OX=3702 GN=PANS1 PE=1 SV=1	[more]

BLAST of MS000565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D672	3.4e-38	93.48	protein PATRONUS 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101743...	[more]
A0A6J1D5A5	3.4e-38	93.48	protein PATRONUS 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101743...	[more]
A0A6J1IFS7	2.3e-26	72.53	protein PATRONUS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472376 PE=4 SV=1	[more]
A0A6J1EKC8	2.3e-26	72.53	protein PATRONUS 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435410...	[more]
A0A6J1ES26	2.3e-26	72.53	protein PATRONUS 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435410...	[more]

BLAST of MS000565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12360.1	9.3e-12	41.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G14190.1	1.9e-09	46.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039326	Protein Patronus	PANTHER	PTHR35125	NEURON NAVIGATOR 1-LIKE-RELATED	coord: 2..89
None	No IPR available	PANTHER	PTHR35125:SF1	PROTEIN PATRONUS 2	coord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000565.1	MS000565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007346	regulation of mitotic cell cycle