MS000565 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT GCTGATGGAAAGGGAAAAAGTTCTAAAATAATTCACAAGAAAGGTGTAGCAGCTGGATCAGGGCGTAAAGCTTTAAATGACATCTCAAATAAATCATCAATCCTTCATCAGGAGGCGCCAATCAGGAAGAAGGAGAGAGCGAAGGAAGAAATTGATGTAGCTGGCGAAAGATTTTTGCATGATCATGATAAATGCATTGAAGCACAAAGACTCCCAGTGCTTGCTTCTTACTTGGATCTGGTTCTTCCTGGACATGGTAAGTTGTTGAACGTTGAGGATAAAATT ADGKGKSSKIIHKKGVAAGSGRKALNDISNKSSILHQEAPIRKKERAKEEIDVAGERFLHDHDKCIEAQRLPVLASYLDLVLPGHGKLLNVEDKI Homology
BLAST of MS000565 vs. NCBI nr
Match: XP_022148866.1 (protein PATRONUS 1-like isoform X1 [Momordica charantia] >XP_022148867.1 protein PATRONUS 1-like isoform X1 [Momordica charantia]) HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38 Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of MS000565 vs. NCBI nr
Match: XP_022148868.1 (protein PATRONUS 1-like isoform X2 [Momordica charantia]) HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38 Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of MS000565 vs. NCBI nr
Match: XP_023530886.1 (protein PATRONUS 1-like [Cucurbita pepo subsp. pepo] >XP_023530888.1 protein PATRONUS 1-like [Cucurbita pepo subsp. pepo] >XP_023530889.1 protein PATRONUS 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. NCBI nr
Match: XP_022928585.1 (protein PATRONUS 1-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 127.9 bits (320), Expect = 4.7e-26 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. NCBI nr
Match: XP_022973829.1 (protein PATRONUS 1-like [Cucurbita maxima] >XP_022973838.1 protein PATRONUS 1-like [Cucurbita maxima]) HSP 1 Score: 127.9 bits (320), Expect = 4.7e-26 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. ExPASy Swiss-Prot
Match: Q94CK6 (Protein PATRONUS 2 OS=Arabidopsis thaliana OX=3702 GN=PANS2 PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of MS000565 vs. ExPASy Swiss-Prot
Match: Q9LJG6 (Protein PATRONUS 1 OS=Arabidopsis thaliana OX=3702 GN=PANS1 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08 Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1D672 (protein PATRONUS 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38 Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1D5A5 (protein PATRONUS 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38 Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1IFS7 (protein PATRONUS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472376 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1EKC8 (protein PATRONUS 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. ExPASy TrEMBL
Match: A0A6J1ES26 (protein PATRONUS 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of MS000565 vs. TAIR 10
Match: AT5G12360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 9.3e-12 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of MS000565 vs. TAIR 10
Match: AT3G14190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09 Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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