MS000483 (gene) Bitter gourd (TR) v1

Overview
NameMS000483
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold44: 1997391 .. 1997769 (-)
RNA-Seq ExpressionMS000483
SyntenyMS000483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCGTGTGTTCGAGTGCCAAATATGCATCGGTGAGTGACACTATTTTTGGGTTTACCATTAAAAGTGGGTTCTTTGCCTCTAATGTATGTGTTGGGTGTGCTTTAATTGACATGTTTGCAAAGGACCGCGGCGACTTGGTTTCAGCTTTTAAGGTGTTTGAGAAAATGCCTGGAAGAATCGCAATTACTTGGACTCTGATGGTTACTTGGTTTATGAAATTTGGCAACCCGGAAGAAGCAGTTAATTTGTTTTTGGATATGATATTGAATGGAAAAGAGCCAGACAGATTAGAATACTATCCTATCGCTAGAGCAGCAGTTGCATTCTCAAGCCATATGCGATGGGTTGACTCTGGATTGCTGTGTTGGTTGTTGTCTA

mRNA sequence

CGCGTGTGTTCGAGTGCCAAATATGCATCGGTGAGTGACACTATTTTTGGGTTTACCATTAAAAGTGGGTTCTTTGCCTCTAATGTATGTGTTGGGTGTGCTTTAATTGACATGTTTGCAAAGGACCGCGGCGACTTGGTTTCAGCTTTTAAGGTGTTTGAGAAAATGCCTGGAAGAATCGCAATTACTTGGACTCTGATGGTTACTTGGTTTATGAAATTTGGCAACCCGGAAGAAGCAGTTAATTTGTTTTTGGATATGATATTGAATGGAAAAGAGCCAGACAGATTAGAAACTATCCTATCGCTAGAGCAGCAGTTGCATTCTCAAGCCATATGCGATGGGTTGACTCTGGATTGCTGTGTTGGTTGTTGTCTA

Coding sequence (CDS)

CGCGTGTGTTCGAGTGCCAAATATGCATCGGTGAGTGACACTATTTTTGGGTTTACCATTAAAAGTGGGTTCTTTGCCTCTAATGTATGTGTTGGGTGTGCTTTAATTGACATGTTTGCAAAGGACCGCGGCGACTTGGTTTCAGCTTTTAAGGTGTTTGAGAAAATGCCTGGAAGAATCGCAATTACTTGGACTCTGATGGTTACTTGGTTTATGAAATTTGGCAACCCGGAAGAAGCAGTTAATTTGTTTTTGGATATGATATTGAATGGAAAAGAGCCAGACAGATTAGAAACTATCCTATCGCTAGAGCAGCAGTTGCATTCTCAAGCCATATGCGATGGGTTGACTCTGGATTGCTGTGTTGGTTGTTGTCTA

Protein sequence

RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLETILSLEQQLHSQAICDGLTLDCCVGCCL
Homology
BLAST of MS000483 vs. NCBI nr
Match: XP_022141097.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-41
Identity = 93/137 (67.88%), Postives = 105/137 (76.64%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R  S A+Y+SV D+IFGF IKSG+FAS+VCVGCALIDM+ K RGDLVSAFKVFEKMP R 
Sbjct: 178 RAGSRAEYSSVGDSIFGFIIKSGYFASDVCVGCALIDMYVKGRGDLVSAFKVFEKMPERN 237

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T +M+FG   EA+NLFLDMIL+G EPDR              ILSL QQLHS
Sbjct: 238 AVTWTLMITXYMQFGYTGEAINLFLDMILSGYEPDRFTLSGVISACTKLEILSLGQQLHS 297

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 298 QAIRHGLTLDRCVGCCL 314

BLAST of MS000483 vs. NCBI nr
Match: XP_022922534.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 171 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 230

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 231 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 290

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 291 QAIKHGLTLDRCVGCCL 307

BLAST of MS000483 vs. NCBI nr
Match: XP_022922533.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 171 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 230

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 231 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 290

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 291 QAIKHGLTLDRCVGCCL 307

BLAST of MS000483 vs. NCBI nr
Match: KAG6576664.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 120 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 179

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 180 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 239

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 240 QAIKHGLTLDRCVGCCL 256

BLAST of MS000483 vs. NCBI nr
Match: KAG7014714.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 171 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 230

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 231 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 290

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 291 QAIKHGLTLDRCVGCCL 307

BLAST of MS000483 vs. ExPASy Swiss-Prot
Match: Q5G1T1 (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS++ +  V     GF +K+G F S+VCVGC+LIDMF K      +A+KVF+KM    
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDR--LETI---------LSLEQQLHS 120
            +TWTLM+T  M+ G P EA+  FLDM+L+G E D+  L ++         LSL +QLHS
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 121 QAICDGLTLDCCVGCCL 127
            AI  GL  D  V C L
Sbjct: 294 WAIRSGLVDD--VECSL 308

BLAST of MS000483 vs. ExPASy Swiss-Prot
Match: Q9FM64 (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           + C + K++     + G+ +KSG     V V  +L DM+ K  G L  A KVF+++P R 
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGK-CGVLDDASKVFDEIPDRN 240

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDR--LETILSLE---------QQLHS 120
           A+ W  ++  +++ G  EEA+ LF DM   G EP R  + T LS           +Q H+
Sbjct: 241 AVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHA 300

Query: 121 QAICDGLTLDCCVGCCL 127
            AI +G+ LD  +G  L
Sbjct: 301 IAIVNGMELDNILGTSL 315

BLAST of MS000483 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 11  VSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAITWTLMVTW 70
           + +TI    I+SG F S + V  +L+ ++A + GD+ SA+KVF+KMP +  + W  ++  
Sbjct: 139 LGETIHSVVIRSG-FGSLIYVQNSLLHLYA-NCGDVASAYKVFDKMPEKDLVAWNSVING 198

Query: 71  FMKFGNPEEAVNLFLDMILNGKEPDRLETILSL 104
           F + G PEEA+ L+ +M   G +PD   TI+SL
Sbjct: 199 FAENGKPEEALALYTEMNSKGIKPDGF-TIVSL 228

BLAST of MS000483 vs. ExPASy Swiss-Prot
Match: Q7Y211 (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 36/116 (31.03%), Postives = 65/116 (56.03%), Query Frame = 0

Query: 3   CSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAI 62
           C++    +    I  + IK+   A++V VG AL+DM+AK  G L  + KVF+++P +  I
Sbjct: 527 CAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAK-CGCLQMSRKVFDQIPQKNVI 586

Query: 63  TWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLETILSLEQQLHSQAICDGLTL 119
           TW +++  +   GN +EA++L   M++ G +P+ +  I       HS  + +GL +
Sbjct: 587 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640

BLAST of MS000483 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           + C+        + +    IKS F+ S+V VG A +DMF K    +  A KVFE+MP R 
Sbjct: 60  KACARLADVGCCEMVHAHLIKSPFW-SDVFVGTATVDMFVK-CNSVDYAAKVFERMPERD 119

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLETILSLEQ 106
           A TW  M++ F + G+ ++A +LF +M LN   PD + T+++L Q
Sbjct: 120 ATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSV-TVMTLIQ 161

BLAST of MS000483 vs. ExPASy TrEMBL
Match: A0A6J1CIW7 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011572 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 93/137 (67.88%), Postives = 105/137 (76.64%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R  S A+Y+SV D+IFGF IKSG+FAS+VCVGCALIDM+ K RGDLVSAFKVFEKMP R 
Sbjct: 178 RAGSRAEYSSVGDSIFGFIIKSGYFASDVCVGCALIDMYVKGRGDLVSAFKVFEKMPERN 237

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T +M+FG   EA+NLFLDMIL+G EPDR              ILSL QQLHS
Sbjct: 238 AVTWTLMITXYMQFGYTGEAINLFLDMILSGYEPDRFTLSGVISACTKLEILSLGQQLHS 297

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 298 QAIRHGLTLDRCVGCCL 314

BLAST of MS000483 vs. ExPASy TrEMBL
Match: A0A6J1E6W5 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430501 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 171 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 230

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 231 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 290

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 291 QAIKHGLTLDRCVGCCL 307

BLAST of MS000483 vs. ExPASy TrEMBL
Match: A0A6J1E3N3 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430501 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+G+FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 171 RACSTAEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 230

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 231 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 290

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 291 QAIKHGLTLDRCVGCCL 307

BLAST of MS000483 vs. ExPASy TrEMBL
Match: A0A6J1J7R2 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483344 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 88/137 (64.23%), Postives = 105/137 (76.64%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+ +FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 177 RACSTAEFASVGDSIFGYVIKTRYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 236

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 237 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 296

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 297 QAIKHGLTLDRCVGCCL 313

BLAST of MS000483 vs. ExPASy TrEMBL
Match: A0A6J1JAX9 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483344 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 88/137 (64.23%), Postives = 105/137 (76.64%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS+A++ASV D+IFG+ IK+ +FAS+VCVGC LIDMF K RGDLVSAF+VFEKMP R 
Sbjct: 177 RACSTAEFASVGDSIFGYVIKTRYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERN 236

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLE-----------TILSLEQQLHS 120
           A+TWTLM+T FM+FG   EA+++FLDMIL+G EPDR              +LSL QQLHS
Sbjct: 237 AVTWTLMITRFMQFGYAGEAIDVFLDMILSGYEPDRFTLSAVISASAKLELLSLGQQLHS 296

Query: 121 QAICDGLTLDCCVGCCL 127
           QAI  GLTLD CVGCCL
Sbjct: 297 QAIKHGLTLDRCVGCCL 313

BLAST of MS000483 vs. TAIR 10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-24
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           R CS++ +  V     GF +K+G F S+VCVGC+LIDMF K      +A+KVF+KM    
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDR--LETI---------LSLEQQLHS 120
            +TWTLM+T  M+ G P EA+  FLDM+L+G E D+  L ++         LSL +QLHS
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 121 QAICDGLTLDCCVGCCL 127
            AI  GL  D  V C L
Sbjct: 294 WAIRSGLVDD--VECSL 308

BLAST of MS000483 vs. TAIR 10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 0

Query: 1   RVCSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRI 60
           + C + K++     + G+ +KSG     V V  +L DM+ K  G L  A KVF+++P R 
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGK-CGVLDDASKVFDEIPDRN 240

Query: 61  AITWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDR--LETILSLE---------QQLHS 120
           A+ W  ++  +++ G  EEA+ LF DM   G EP R  + T LS           +Q H+
Sbjct: 241 AVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHA 300

Query: 121 QAICDGLTLDCCVGCCL 127
            AI +G+ LD  +G  L
Sbjct: 301 IAIVNGMELDNILGTSL 315

BLAST of MS000483 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 11  VSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAITWTLMVTW 70
           + +TI    I+SG F S + V  +L+ ++A + GD+ SA+KVF+KMP +  + W  ++  
Sbjct: 139 LGETIHSVVIRSG-FGSLIYVQNSLLHLYA-NCGDVASAYKVFDKMPEKDLVAWNSVING 198

Query: 71  FMKFGNPEEAVNLFLDMILNGKEPDRLETILSL 104
           F + G PEEA+ L+ +M   G +PD   TI+SL
Sbjct: 199 FAENGKPEEALALYTEMNSKGIKPDGF-TIVSL 228

BLAST of MS000483 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 11  VSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAITWTLMVTW 70
           + +TI    I+SG F S + V  +L+ ++A + GD+ SA+KVF+KMP +  + W  ++  
Sbjct: 6   LGETIHSVVIRSG-FGSLIYVQNSLLHLYA-NCGDVASAYKVFDKMPEKDLVAWNSVING 65

Query: 71  FMKFGNPEEAVNLFLDMILNGKEPDRLETILSL 104
           F + G PEEA+ L+ +M   G +PD   TI+SL
Sbjct: 66  FAENGKPEEALALYTEMNSKGIKPDGF-TIVSL 95

BLAST of MS000483 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-10
Identity = 36/116 (31.03%), Postives = 65/116 (56.03%), Query Frame = 0

Query: 3   CSSAKYASVSDTIFGFTIKSGFFASNVCVGCALIDMFAKDRGDLVSAFKVFEKMPGRIAI 62
           C++    +    I  + IK+   A++V VG AL+DM+AK  G L  + KVF+++P +  I
Sbjct: 527 CAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAK-CGCLQMSRKVFDQIPQKNVI 586

Query: 63  TWTLMVTWFMKFGNPEEAVNLFLDMILNGKEPDRLETILSLEQQLHSQAICDGLTL 119
           TW +++  +   GN +EA++L   M++ G +P+ +  I       HS  + +GL +
Sbjct: 587 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141097.16.9e-4167.88pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Momordica ... [more]
XP_022922534.13.4e-4064.96pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 ... [more]
XP_022922533.13.4e-4064.96pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 ... [more]
KAG6576664.13.4e-4064.96Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
KAG7014714.13.4e-4064.96Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q5G1T14.0e-2345.26Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
Q9FM642.9e-1033.58Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop... [more]
A8MQA37.3e-0938.71Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
Q7Y2111.2e-0831.03Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop... [more]
P0C8Q21.6e-0837.14Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1CIW73.4e-4167.88pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Momordic... [more]
A0A6J1E6W51.7e-4064.96pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 ... [more]
A0A6J1E3N31.7e-4064.96pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 ... [more]
A0A6J1J7R21.4e-3964.23pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 ... [more]
A0A6J1JAX91.4e-3964.23pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 ... [more]
Match NameE-valueIdentityDescription
AT3G49170.12.8e-2445.26Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G55740.12.1e-1133.58Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G21065.15.2e-1038.71Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G21065.25.2e-1038.71Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G57430.18.8e-1031.03Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..112
e-value: 2.1E-12
score: 48.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 62..91
e-value: 1.3E-5
score: 25.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 62..95
e-value: 1.5E-5
score: 22.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 60..94
score: 9.240434
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 3..126
NoneNo IPR availablePANTHERPTHR24015:SF47OS01G0374200 PROTEINcoord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000483.1MS000483.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding