MS000306 (gene) Bitter gourd (TR) v1

Overview
NameMS000306
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold44: 774042 .. 774597 (-)
RNA-Seq ExpressionMS000306
SyntenyMS000306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGTGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATGTGAGTCTTTATAACCCCTCTCTCATATGTTTAACTTATGAATTACATATAAGTTTTTGGATTGTGTAAAAAAAAATATTATAGATACTTAGTCTGTGTAATCTATGGTTTTTGAGTTTATAATTTGTAAAAGTTAGTATACAATAAATTAAAACAAGTGTTTCAGGTTTGAACTTATTTAACATGAATTTATAGCTTGTGGGATTAGCATATCCATAGCTCCTGATAGAAGACTTATAAATCAAATATAAAACTGTTGGTTTTTTTCTTGCACTCTTTGAAATCTCTGATTAATTTACTGTGTTTTGTTTTTCAGACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGGTGGAAACTAC

mRNA sequence

ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGTGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGGTGGAAACTAC

Coding sequence (CDS)

ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGTGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGGTGGAAACTAC

Protein sequence

MASKRVSVIWAVVFLFIMLLMASNVAARKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEKTYQDFLRSHISNDDPRGGNY
Homology
[Close]
BLAST of MS000306 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 1  MASKRVSVIWAVVFLFIMLLMASNVAARKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEK 60
          MAS  VSV W  VF   MLLMASNV++RK  D +IP+ DG NV+  AS   Y+ E E+EK
Sbjct: 1  MASTNVSVSWRAVFFIAMLLMASNVSSRKLLDANIPVEDGFNVEIGASSFFYELEGELEK 60

Query: 61 TYQDFLRSHISNDDPRGGNY 81
           ++ F++SH  ND PRGGNY
Sbjct: 61 RFESFIKSHTDNDVPRGGNY 80

[Close]
BLAST of MS000306 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1  MASKRVSVIWAVVFLFIMLLMAS----NVAARKFPDTHIPLGDGLNVQFDASPLLYKFEV 60
          MASKRVS+I  VVF  IMLL++S    NV+ARKF D + PL D  N+Q DAS L YK + 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EMEKTYQDFLRSHISNDDPRGGNY 81
          E+++ ++D L++   ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of MS000306 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0 

Query: 1  MASKRVSVIWAVVFLFIMLLMAS----NVAARKFPDTHIP-LGDGLNVQFDASPLLYKFE 60
          MAS RVS+I  V+F  IML ++S    N +ARKF D + P L D  ++Q  AS L YK E
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 VEMEKTYQDFLRSHISNDDPRGGNY 81
           E++K ++D L++   ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of MS000306 vs. NCBI nr
Match: XP_031739611.1 (uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-06
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 28  RKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEKTYQDFLRSHISNDDPRGGNY 81
           +KF D + PL D  N+Q DAS L YK + E+++ ++D L++   ND PRGGNY
Sbjct: 54  KKFLDVNTPLDDAFNLQMDASSLFYKMKGELQRRFEDLLKATTDNDIPRGGNY 106

[Close]
BLAST of MS000306 vs. ExPASy TrEMBL
Match: A0A0A0KW84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1  MASKRVSVIWAVVFLFIMLLMAS----NVAARKFPDTHIPLGDGLNVQFDASPLLYKFEV 60
          MASKRVS+I  VVF  IMLL++S    NV+ARKF D + PL D  N+Q DAS L YK + 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EMEKTYQDFLRSHISNDDPRGGNY 81
          E+++ ++D L++   ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of MS000306 vs. ExPASy TrEMBL
Match: A0A0A0KU24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0 

Query: 1  MASKRVSVIWAVVFLFIMLLMAS----NVAARKFPDTHIP-LGDGLNVQFDASPLLYKFE 60
          MAS RVS+I  V+F  IML ++S    N +ARKF D + P L D  ++Q  AS L YK E
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 VEMEKTYQDFLRSHISNDDPRGGNY 81
           E++K ++D L++   ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of MS000306 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600181.12.4e-1555.00hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53134.12.3e-1353.57hypothetical protein Csa_015383 [Cucumis sativus][more]
KGN53135.12.0e-0948.24hypothetical protein Csa_014652 [Cucumis sativus][more]
XP_031739611.16.0e-0647.17uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus][more]
BLAST of MS000306 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS000306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW841.1e-1353.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU249.6e-1048.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of MS000306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000306.1MS000306.1mRNA