MELO3C035773 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035773
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	zf-C2HC5 domain-containing protein
Location	chr12: 25687677 .. 25688846 (+)
RNA-Seq Expression	MELO3C035773
Synteny	MELO3C035773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAGTTTCAAGAACCATTACAGATAATTCAATTCAAGCAACAATAATCTGTAATTGTGTAAAGCAAACCGACTATACCATCAAACAAATACCGAGAAACAGAGGGAACCACGTGCCGGATTTAGCCTCTGATACCGAGACCCAAAACCACTCAAAACCGTCGGGAAACCCAACTCCTCAACTGACCCGTCACAACCACGTCTGGACAGCCAGCAAAAACCCCGACAAACCCGTCGCGGACTGTCTATAATAGCCCAGAAACCGTGACTCAGCCACCGCGAACCGAACGCCCCAAAGCTGAACGTAAAGCTCTTAAATATTGTTACCTCATAAACCTCCAGGAATTCTAAGAGTTGATCCTTATGCACAACATAGAATAGAATCCAGCAAAGTCCATTAGTTATAGAAAAACTTTGCAAACTAGGAAAGGAGATCTTGGTGCCATTATCTCTCTGTTTCCATCTTCCTCGGAGATTAATGATTCATAAAGATCAAAGTTGATAAGATTGCGCCGTTTAACTTTCATAAGAAGAAAAAAGCTAGGTACTTCGAAGCTCCACTAGAGTTTTTCAGTAGACGGTTGCCGAAATGAGCATTGGGTTAAATGAAACACAGCTGGGGTTTAGGGTTCCGAAAAGGAGGCTGTAGAACAAAGAGAAGAAGACGAAGAGGATGAACCCTGGGGTGAACTGATGAAGGGAGAGACGAAAGGGAAACCCACTTTCCTTACACGTGGCAAGATCTTAAAAGCGTGCGTATTAAAGTAAATGTGGTGCACGGAACACTGCATTACCAATCGTCGTTCTTAGTGTTTCGAGGATTGAAGCTTTAGCCGTCAGTCGCTTGGGTTGTCGTCTGAGAGAGAGAAGAATGGCGACGTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTCTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATGTAAATTTCTTCGCTCGGCTTCCTTTTTTTTTTTTTTTTTTTTTTTCGCAATAATCTGAATGATTGAGATATGTTTGTTCTGTTCGATGAACTTCGCTTCTGGCTTTCGATATGTCGCTGTACTAGTAGTCTTCGCATCGTCGCTTTGA

mRNA sequence

GCAAAGTTTCAAGAACCATTACAGATAATTCAATTCAAGCAACAATAATCTGTAATTGTGTAAAGCAAACCGACTATACCATCAAACAAATACCGAGAAACAGAGGGAACCACGTGCCGGATTTAGCCTCTGATACCGAGACCCAAAACCACTCAAAACCGTCGGGAAACCCAACTCCTCAACTGACCCGTCACAACCACGTCTGGACAGCCAGCAAAAACCCCGACAAACCCGTCGCGGACTGTCTATAATAGCCCAGAAACCGTGACTCAGCCACCGCGAACCGAACGCCCCAAAGCTGAACGTAAAGCTCTTAAATATTGTTACCTCATAAACCTCCAGGAATTCTAAGAGTTGATCCTTATGCACAACATAGAATAGAATCCAGCAAAGTCCATTAGTTATAGAAAAACTTTGCAAACTAGGAAAGGAGATCTTGGTGCCATTATCTCTCTGTTTCCATCTTCCTCGGAGATTAATGATTCATAAAGATCAAAGTTGATAAGATTGCGCCGTTTAACTTTCATAAGAAGAAAAAAGCTAGGTACTTCGAAGCTCCACTAGAGTTTTTCAGTAGACGGTTGCCGAAATGAGCATTGGGTTAAATGAAACACAGCTGGGGTTTAGGGTTCCGAAAAGGAGGCTGTAGAACAAAGAGAAGAAGACGAAGAGGATGAACCCTGGGGTGAACTGATGAAGGGAGAGACGAAAGGGAAACCCACTTTCCTTACACGTGGCAAGATCTTAAAAGCGTGCGTATTAAAGTAAATGTGGTGCACGGAACACTGCATTACCAATCGTCGTTCTTAGTGTTTCGAGGATTGAAGCTTTAGCCGTCAGTCGCTTGGGTTGTCGTCTGAGAGAGAGAAGAATGGCGACGTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTCTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATATATGTTTGTTCTGTTCGATGAACTTCGCTTCTGGCTTTCGATATGTCGCTGTACTAGTAGTCTTCGCATCGTCGCTTTGA

Coding sequence (CDS)

ATGGCGACGTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTCTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATATATGTTTGTTCTGTTCGATGAACTTCGCTTCTGGCTTTCGATATGTCGCTGTACTAGTAGTCTTCGCATCGTCGCTTTGA

Protein sequence

MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDICLFCSMNFASGFRYVAVLVVFASSL

Homology

[Close]

BLAST of MELO3C035773 vs. NCBI nr
Match: KAE8652507.1 (hypothetical protein Csa_014043 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDICLFCSMNF 60
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD+     + F
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVNFLARLPF 59

[Close]

BLAST of MELO3C035773 vs. NCBI nr
Match: KAA0036077.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. NCBI nr
Match: XP_038894201.1 (uncharacterized protein LOC120082886 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. NCBI nr
Match: XP_023001344.1 (uncharacterized protein LOC111495503 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. NCBI nr
Match: XP_022923752.1 (uncharacterized protein LOC111431364 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. ExPASy TrEMBL
Match: A0A6J1KMG5 (uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. ExPASy TrEMBL
Match: A0A0A0LSM8 (zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. ExPASy TrEMBL
Match: A0A6J1E707 (uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC111431364 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. ExPASy TrEMBL
Match: A0A1S3B4L7 (uncharacterized protein C1A6.01c OS=Cucumis melo OX=3656 GN=LOC103485946 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

[Close]

BLAST of MELO3C035773 vs. TAIR 10
Match: AT3G47610.1 (transcription regulators;zinc ion binding )

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 5  GQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          GQWLE+AL DLC+K ETG   D+D+ISGLVSYC+LAQP DAKEYLD
Sbjct: 6  GQWLEEALVDLCRKPETGLNFDRDVISGLVSYCDLAQPVDAKEYLD 51

The following BLAST results are available for this feature:

BLAST of MELO3C035773 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035773 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652507.1	2.8e-21	86.44	hypothetical protein Csa_014043 [Cucumis sativus]	[more]
KAA0036077.1	6.3e-21	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_038894201.1	6.3e-21	100.00	uncharacterized protein LOC120082886 [Benincasa hispida]	[more]
XP_023001344.1	6.3e-21	100.00	uncharacterized protein LOC111495503 [Cucurbita maxima]	[more]
XP_022923752.1	6.3e-21	100.00	uncharacterized protein LOC111431364 [Cucurbita moschata]	[more]

BLAST of MELO3C035773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMG5	3.0e-21	100.00	uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503...	[more]
A0A5A7T3B5	3.0e-21	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LSM8	3.0e-21	100.00	zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE...	[more]
A0A6J1E707	3.0e-21	100.00	uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A1S3B4L7	3.0e-21	100.00	uncharacterized protein C1A6.01c OS=Cucumis melo OX=3656 GN=LOC103485946 PE=4 SV...	[more]

BLAST of MELO3C035773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47610.1	1.4e-15	76.09	transcription regulators;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12963:SF4	TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN	coord: 2..50
IPR039128	Activating signal cointegrator 1-like	PANTHER	PTHR12963	THYROID RECEPTOR INTERACTING PROTEIN RELATED	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035773.1	MELO3C035773.1	mRNA