MELO3C035718 (gene) Melon (DHL92) v4

Overview
NameMELO3C035718
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPrecursor of CEP14
Locationchr12: 20751889 .. 20752209 (-)
RNA-Seq ExpressionMELO3C035718
SyntenyMELO3C035718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCTCAACCAAAAATTCTCCATTTCTTTGCACCATCTTCCTAATTCTTCTTCTATCCTCCATCATTTCCCCATCTAATTCCCAATCCACAAACAAACTTCATTATTCCAACTCCCTCTTCTTCCCTTCCCTCCCCAAAGCCCCAACGCCGCCGTCATCTCCCAGCAACAAAGGCCACGCCACTCTCACCGACCTTAAGCTCCTCCACCGCACCAATCGCCGCCTCATCGCCGACCATTCTTCCCAATCCCCACATTATTATATTTACTGCAATCGGTTTCTCCGCTCCGTCCCAAGCCCCGGTGTCGGCCATTGA

mRNA sequence

ATGACTTCCTCAACCAAAAATTCTCCATTTCTTTGCACCATCTTCCTAATTCTTCTTCTATCCTCCATCATTTCCCCATCTAATTCCCAATCCACAAACAAACTTCATTATTCCAACTCCCTCTTCTTCCCTTCCCTCCCCAAAGCCCCAACGCCGCCGTCATCTCCCAGCAACAAAGGCCACGCCACTCTCACCGACCTTAAGCTCCTCCACCGCACCAATCGCCGCCTCATCGCCGACCATTCTTCCCAATCCCCACATTATTATATTTACTGCAATCGGTTTCTCCGCTCCGTCCCAAGCCCCGGTGTCGGCCATTGA

Coding sequence (CDS)

ATGACTTCCTCAACCAAAAATTCTCCATTTCTTTGCACCATCTTCCTAATTCTTCTTCTATCCTCCATCATTTCCCCATCTAATTCCCAATCCACAAACAAACTTCATTATTCCAACTCCCTCTTCTTCCCTTCCCTCCCCAAAGCCCCAACGCCGCCGTCATCTCCCAGCAACAAAGGCCACGCCACTCTCACCGACCTTAAGCTCCTCCACCGCACCAATCGCCGCCTCATCGCCGACCATTCTTCCCAATCCCCACATTATTATATTTACTGCAATCGGTTTCTCCGCTCCGTCCCAAGCCCCGGTGTCGGCCATTGA

Protein sequence

MTSSTKNSPFLCTIFLILLLSSIISPSNSQSTNKLHYSNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH
Homology
[Close]
BLAST of MELO3C035718 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 14  IFLILLLSSIISPSNSQSTNKLHY--SNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLH 73
           I L++L+   +  S+      + Y  S  LF  +LPK   PPS PS+KGH +  D     
Sbjct: 11  ICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPPD----- 70

Query: 74  RTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
            T++R++ ++   SP  Y    R L SVPSPGVGH
Sbjct: 71  DTDQRMVPEN---SPEIY----RRLESVPSPGVGH 93

[Close]
BLAST of MELO3C035718 vs. NCBI nr
Match: KAG8385402.1 (hypothetical protein BUALT_Bualt03G0039300 [Buddleja alternifolia])

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-05
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 0 

Query: 14  IFLILLLSSIISPSNSQSTNKLHYSN--------SLFFPSLPKAPTPPSSPSNKGHATLT 73
           +FL L+ S+++S +N +      + N        SL+  +LPK   P S+PS KGHA + 
Sbjct: 10  VFLALIFSTLVSTTNGRKLLMNVHQNKVPSPADMSLYLSALPKGKVPASTPSKKGHAAIV 69

Query: 74  DLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           D        R+LIA H +         +R LRSVPSPG+GH
Sbjct: 70  D--------RKLIARHLTS-------VDRILRSVPSPGIGH 95

[Close]
BLAST of MELO3C035718 vs. NCBI nr
Match: KAF9856237.1 (hypothetical protein H0E87_008768 [Populus deltoides])

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-05
Identity = 36/82 (43.90%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 25  SPSNSQSTNKLHYSNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHRTNRRLIADHSSQ 84
           S SN++ T+ +    SL   +LPK   P SSPS KGHATL         N +L A H + 
Sbjct: 39  SSSNNEGTSSVSSFASLVLSALPKGTVPSSSPSKKGHATL--------DNEQLFARHLAS 98

Query: 85  SPHYYIYCNRFLRSVPSPGVGH 107
                   +R LRSVPSPGVGH
Sbjct: 99  -------IDRILRSVPSPGVGH 105

[Close]
BLAST of MELO3C035718 vs. NCBI nr
Match: KAG6777186.1 (hypothetical protein POTOM_017002 [Populus tomentosa])

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-05
Identity = 36/82 (43.90%), Postives = 43/82 (52.44%), Query Frame = 0 

Query: 25  SPSNSQSTNKLHYSNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHRTNRRLIADHSSQ 84
           S SN + T+ +    SL   +LPK   P SSPS KGHATL         N +L A H + 
Sbjct: 39  SSSNKEGTSSVSSFASLVLSALPKGTVPSSSPSKKGHATL--------DNEQLFARHLAS 98

Query: 85  SPHYYIYCNRFLRSVPSPGVGH 107
                   +R LRSVPSPGVGH
Sbjct: 99  -------IDRILRSVPSPGVGH 105

[Close]
BLAST of MELO3C035718 vs. NCBI nr
Match: PWA78221.1 (hypothetical protein CTI12_AA219340 [Artemisia annua])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 39/104 (37.50%), Postives = 52/104 (50.00%), Query Frame = 0 

Query: 10  FLCTIFLILLLSS------IISPSNSQSTNKL-HYSNSLFFPSLPKAPTPPSSPSNKGHA 69
           F+  + L++  SS      +  P +S       H   SL+  SLPK   P S+PS KGHA
Sbjct: 6   FILIMLLVIFASSTDARKLLDKPDSSPKAEATSHVDMSLYLSSLPKGTVPSSTPSKKGHA 65

Query: 70  TLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           ++TD KL+ R               + I  +R LRSVPSPGVGH
Sbjct: 66  SITDEKLITR---------------HLIAIDRILRSVPSPGVGH 94

[Close]
BLAST of MELO3C035718 vs. NCBI nr
Match: PWA53897.1 (hypothetical protein CTI12_AA440470 [Artemisia annua])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 39/104 (37.50%), Postives = 52/104 (50.00%), Query Frame = 0 

Query: 10  FLCTIFLILLLSS------IISPSNSQSTNKL-HYSNSLFFPSLPKAPTPPSSPSNKGHA 69
           F+  + L++  SS      +  P +S       H   SL+  SLPK   P S+PS KGHA
Sbjct: 6   FILIMLLVIFASSTDARKLLDKPDSSPKAEATSHVDMSLYLSSLPKGTVPSSTPSKKGHA 65

Query: 70  TLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           ++TD KL+ R               + I  +R LRSVPSPGVGH
Sbjct: 66  SITDEKLITR---------------HLIAIDRILRSVPSPGVGH 94

[Close]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match: A0A2U1NXJ6 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219340 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-05
Identity = 39/104 (37.50%), Postives = 52/104 (50.00%), Query Frame = 0 

Query: 10  FLCTIFLILLLSS------IISPSNSQSTNKL-HYSNSLFFPSLPKAPTPPSSPSNKGHA 69
           F+  + L++  SS      +  P +S       H   SL+  SLPK   P S+PS KGHA
Sbjct: 6   FILIMLLVIFASSTDARKLLDKPDSSPKAEATSHVDMSLYLSSLPKGTVPSSTPSKKGHA 65

Query: 70  TLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           ++TD KL+ R               + I  +R LRSVPSPGVGH
Sbjct: 66  SITDEKLITR---------------HLIAIDRILRSVPSPGVGH 94

[Close]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match: A0A2U1LY30 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA440470 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-05
Identity = 39/104 (37.50%), Postives = 52/104 (50.00%), Query Frame = 0 

Query: 10  FLCTIFLILLLSS------IISPSNSQSTNKL-HYSNSLFFPSLPKAPTPPSSPSNKGHA 69
           F+  + L++  SS      +  P +S       H   SL+  SLPK   P S+PS KGHA
Sbjct: 6   FILIMLLVIFASSTDARKLLDKPDSSPKAEATSHVDMSLYLSSLPKGTVPSSTPSKKGHA 65

Query: 70  TLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           ++TD KL+ R               + I  +R LRSVPSPGVGH
Sbjct: 66  SITDEKLITR---------------HLIAIDRILRSVPSPGVGH 94

[Close]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match: B9H2E9 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G061300 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 41/94 (43.62%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 18  LLLSSIISPSNSQSTNKLHYSN-----SLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHR 77
           LL+S+     NS S+NK   S+     SL   +LPK   P SSPS KGHATL        
Sbjct: 27  LLMSTGTPQENSSSSNKEGTSSVSSFASLVLSALPKGTVPSSSPSKKGHATL-------- 86

Query: 78  TNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
            N +L A H +         +R LRSVPSPGVGH
Sbjct: 87  DNEQLFARHLAS-------IDRILRSVPSPGVGH 105

[Close]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match: A0A103XEV0 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008558 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 40  SLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSV 99
           SL+  SLPK   P S+PS KGHA+ TD KL+ R               + I  +R LRSV
Sbjct: 43  SLYLTSLPKGTVPASAPSKKGHASTTDEKLITR---------------HLITVDRILRSV 94

Query: 100 PSPGVGH 107
           PSPGVGH
Sbjct: 103 PSPGVGH 94

[Close]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match: A0A0L9TKA5 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g043200 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 39/107 (36.45%), Postives = 49/107 (45.79%), Query Frame = 0 

Query: 9   PFLCTIFLILLLSS---------IISPSNSQSTNKLHYSNSLFFPSLPKAPTPPSSPSNK 68
           P    + L++LL+S         ++  +     N     +SLF  +LPK   PPSSPS K
Sbjct: 4   PTTVVLLLMILLASLWSCLEARKLVVENQQNKVNPSSRRDSLFLSALPKGTVPPSSPSKK 63

Query: 69  GHATLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
           GHAT  D KL+ R              H        LRSVPSPGVGH
Sbjct: 64  GHATEVDEKLISR--------------HLITIDRVLLRSVPSPGVGH 96

[Close]
BLAST of MELO3C035718 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 14  IFLILLLSSIISPSNSQSTNKLHY--SNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLH 73
           I L++L+   +  S+      + Y  S  LF  +LPK   PPS PS+KGH +  D     
Sbjct: 11  ICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPPD----- 70

Query: 74  RTNRRLIADHSSQSPHYYIYCNRFLRSVPSPGVGH 107
            T++R++ ++   SP  Y    R L SVPSPGVGH
Sbjct: 71  DTDQRMVPEN---SPEIY----RRLESVPSPGVGH 93

[Close]
BLAST of MELO3C035718 vs. TAIR 10
Match: AT1G29290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 7.2e-05
Identity = 29/71 (40.85%), Postives = 36/71 (50.70%), Query Frame = 0 

Query: 36  HYSNSLFFPSLPKAPTPPSSPSNKGHATLTDLKLLHRTNRRLIADHSSQSPHYYIYCNRF 95
           H + +    +LPK   P S+PS KGHA +   KL  R        H S         +R+
Sbjct: 52  HVTKTSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSR--------HLST-------VDRY 107

Query: 96  LRSVPSPGVGH 107
           LRSVPSPGVGH
Sbjct: 112 LRSVPSPGVGH 107

The following BLAST results are available for this feature:
BLAST of MELO3C035718 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FZ541.8e-0537.89Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1[more]
BLAST of MELO3C035718 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8385402.16.7e-0536.63hypothetical protein BUALT_Bualt03G0039300 [Buddleja alternifolia][more]
KAF9856237.16.7e-0543.90hypothetical protein H0E87_008768 [Populus deltoides][more]
KAG6777186.18.8e-0543.90hypothetical protein POTOM_017002 [Populus tomentosa][more]
PWA78221.11.1e-0437.50hypothetical protein CTI12_AA219340 [Artemisia annua][more]
PWA53897.11.1e-0437.50hypothetical protein CTI12_AA440470 [Artemisia annua][more]
BLAST of MELO3C035718 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2U1NXJ65.6e-0537.50Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219340 PE=4 SV=1[more]
A0A2U1LY305.6e-0537.50Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA440470 PE=4 SV=1[more]
B9H2E99.5e-0543.62Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G061300 PE=4 ... [more]
A0A103XEV09.5e-0547.76Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008... [more]
A0A0L9TKA51.2e-0436.45Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g043200 PE... [more]
BLAST of MELO3C035718 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16950.11.3e-0637.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G29290.17.2e-0540.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035718.1MELO3C035718.1mRNA