MELO3C035027 (gene) Melon (DHL92) v4

Overview
NameMELO3C035027
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIsochorismatase domain-containing protein
Locationchr11: 16093632 .. 16094509 (+)
RNA-Seq ExpressionMELO3C035027
SyntenyMELO3C035027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCGAAATCGCAAGGAATCACGGGTTTTTCATCATTTAAGTCCGTTAATTTTGAAAAGGAAAAAAGATATTCCTAATCCTCTGTTTGGACGGATTTTAAACCGTGAATTTAATTACTATTTGTTTTCCCCTAGGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGATTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGTAGTACAAGGAATTGAATTAAAAAGGAGAATATAAATTTGGTTAAACTAGGTTAGGTTCAGTGCCTTTTTTAATACTGATTTACATTGTCTTCTTCAGGAGGAGTATCACTGATTTGGTTGTCTCTAGTAACACTCTTTATATATAAATATTTCCTGTTAATTCTATTCCAATATGAATTTATAGATTGAATGGTTAATGAATTAATATAATGGTAGGTGTTCAAACCCCAAACTGTATCAGATAGAGTGTTTTTTATGTTGTAGATTTGGATTACCATTCTATCACTCTTATTTATCTACTACAGCTTCTACTCCCAAAATTCATCATGGTATCTCTAATTTCCTCATTTATAGCTTTTGAGTTCAGTAATCAGTAGCGATTTGTAATGTTGTGGTTGTTTACTCCTAAATTGATATTGATATTCACTTGTTAGGTTGATTAAGTATTGGTATGATGTTAGTGGGGTTTGTGGAACAAATTGGCTAAGTTTTAGAATCATTGCATCTTCAGAAGAAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGAGAATTATAGATTGGTTGAGAGGGAGATTTGGGTACGCGTTAAAGAAATCGAAGAGAAAGTTGAGAGATAA

mRNA sequence

ATGCTGTCGAAATCGCAAGGAATCACGGGTTTTTCATCATTTAAGTCCGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGATTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGAGGAGTATCACTGATTTGGTTGTCTCTAATTTGGATTACCATTCTATCACTCTTATTTATCTACTACAGCTTCTACTCCCAAAATTCATCATGAAGAAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGAGAATTATAGATTGGTTGAGAGGGAGATTTGGGTACGCGTTAAAGAAATCGAAGAGAAAGTTGAGAGATAA

Coding sequence (CDS)

ATGCTGTCGAAATCGCAAGGAATCACGGGTTTTTCATCATTTAAGTCCGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGATTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGAGGAGTATCACTGATTTGGTTGTCTCTAATTTGGATTACCATTCTATCACTCTTATTTATCTACTACAGCTTCTACTCCCAAAATTCATCATGAAGAAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGAGAATTATAGATTGGTTGAGAGGGAGATTTGGGTACGCGTTAAAGAAATCGAAGAGAAAGTTGAGAGATAA

Protein sequence

MLSKSQGITGFSSFKSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQRRSITDLVVSNLDYHSITLIYLLQLLLPKFIMKKDLVYKVVRVLENYRLVEREIWVRVKEIEEKVER
Homology
[Close]
BLAST of MELO3C035027 vs. NCBI nr
Match: KAA0047912.1 (hypothetical protein E6C27_scaffold133G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-17
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 1  MLSKSQGITGFSSFKSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR 57
          MLSKSQGITGFSSF        SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR
Sbjct: 1  MLSKSQGITGFSSF--------SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR 48

[Close]
BLAST of MELO3C035027 vs. NCBI nr
Match: XP_004141764.1 (probable inactive nicotinamidase At3g16190 [Cucumis sativus] >KGN45388.1 hypothetical protein Csa_015610 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

[Close]
BLAST of MELO3C035027 vs. NCBI nr
Match: XP_008465520.1 (PREDICTED: probable inactive nicotinamidase At3g16190 isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

[Close]
BLAST of MELO3C035027 vs. NCBI nr
Match: KAA0059313.1 (putative inactive nicotinamidase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

[Close]
BLAST of MELO3C035027 vs. NCBI nr
Match: TYK04015.1 (putative inactive nicotinamidase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 82  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 141

[Close]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match: A0A5A7TWN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001930 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.3e-17
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 1  MLSKSQGITGFSSFKSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR 57
          MLSKSQGITGFSSF        SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR
Sbjct: 1  MLSKSQGITGFSSF--------SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR 48

[Close]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match: A0A0A0K7E5 (Isochorismatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447030 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-08
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

[Close]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match: A0A5A7UTR3 (Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00370 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

[Close]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match: A0A5D3BXX3 (Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002130 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 82  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 141

[Close]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match: A0A1S3CP26 (probable inactive nicotinamidase At3g16190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503139 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 47/105 (44.76%), Postives = 49/105 (46.67%), Query Frame = 0 

Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSK-------WEAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

The following BLAST results are available for this feature:
BLAST of MELO3C035027 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035027 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047912.18.8e-1785.71hypothetical protein E6C27_scaffold133G001930 [Cucumis melo var. makuwa][more]
XP_004141764.11.3e-0744.76probable inactive nicotinamidase At3g16190 [Cucumis sativus] >KGN45388.1 hypothe... [more]
XP_008465520.13.7e-0744.76PREDICTED: probable inactive nicotinamidase At3g16190 isoform X1 [Cucumis melo][more]
KAA0059313.13.7e-0744.76putative inactive nicotinamidase [Cucumis melo var. makuwa][more]
TYK04015.13.7e-0744.76putative inactive nicotinamidase [Cucumis melo var. makuwa][more]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TWN44.3e-1785.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0K7E56.2e-0844.76Isochorismatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G44... [more]
A0A5A7UTR31.8e-0744.76Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3BXX31.8e-0744.76Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CP261.8e-0744.76probable inactive nicotinamidase At3g16190 isoform X1 OS=Cucumis melo OX=3656 GN... [more]
BLAST of MELO3C035027 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035027.1MELO3C035027.1mRNA