MELO3C034693 (gene) Melon (DHL92) v4

Overview
NameMELO3C034693
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description40S ribosomal protein S15-4
Locationchr10: 25245357 .. 25245609 (+)
RNA-Seq ExpressionMELO3C034693
SyntenyMELO3C034693
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGTTGTGGTTGGAGGCGGAAGAAATTGTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCCTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGAAGAAGGCGTCCTTGGAGGCAGAAGAAGGCGTTCTTAACGTGGAGAATGGTAAAGATGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAAAGGAGAAAATCGCGCAGAGGAATGAAGGAGGAGAAATTCACGCCAATAT

mRNA sequence

AAGAAGTTGTGGTTGGAGGCGGAAGAAATTGTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCCTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGAAGAAGGCGTCCTTAACGTGGAGAATGGTAAAGATGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAAAGGAGAAAATCGCGCAGAGGAATGAAGGAGGAGAAATTCACGCCAATAT

Coding sequence (CDS)

AGAAGTTGTGGTTGGAGGCGGAAGAAATTGTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCCTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGAAGAAGGCGTCCTTAACGTGGAGAATGGTAAAGATGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAAAGGAGAAAATCGCGCAGAGGAATGAAGGAGGAGAAATTCACGCCAAT

Protein sequence

RSCGWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVEEGVLNVENGKDEEGRKSWRIYWRKEKIAQRNEGGEIHAN
Homology
BLAST of MELO3C034693 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 50/73 (68.49%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 4  GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVE-------------EGVLNVENGKDEE 63
          GWRRKK  LEAEEGVVGG  RR WRRKK  LE E             EGVLNVENGKDEE
Sbjct: 4  GWRRKKASLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEE 63

BLAST of MELO3C034693 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 51/86 (59.30%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 4  GWRRKKL----------------WLEAEEGVVGGERRRPWRRKKASL----EVEEGVLNV 63
          GWRRKKL                WLEAEEGVVGGERRR WRR KAS       EEGVL  
Sbjct: 8  GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVL-- 67

Query: 64 ENGKDEEGRKSWRIYWRKEKIAQRNE 70
          ENGK EE RKSWRIYWR  K  +R E
Sbjct: 68 ENGKAEEVRKSWRIYWRGRKSRRRME 91

BLAST of MELO3C034693 vs. NCBI nr
Match: TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   RSCGWRRKKL--------WLEAEEGVVGGERRRPWRRKKASLEVEEGVL 42
           RSCGWRRKKL        WLEAEEGVVGGERRR W+RKKASLE EEGV+
Sbjct: 332 RSCGWRRKKLWLETEDDDWLEAEEGVVGGERRRRWKRKKASLEAEEGVV 380

BLAST of MELO3C034693 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 4   GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVEEGVLNVENGKDEEGRKSWRIYWRKEK 63
           GWR+KK  LEA+EG+VGG RRR           EEGVL  ENGK EEGRKSWRIYWR  K
Sbjct: 102 GWRQKKASLEAKEGIVGGGRRR---------RAEEGVL--ENGKAEEGRKSWRIYWRGRK 156

Query: 64  IAQRNE 70
             +R E
Sbjct: 162 SRRRME 156

BLAST of MELO3C034693 vs. NCBI nr
Match: TYJ97125.1 (S-antigen protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 4  GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVEEGVLNVENGKDEEGRKSWRIYWRKEK 63
          GWRRKKLWLEAEEGVVGG RRR WR KKA LE EEGV  V  G+    R+ WR   RK+ 
Sbjct: 4  GWRRKKLWLEAEEGVVGGGRRRGWRLKKAWLEAEEGV--VGGGR----RRGWR---RKKA 61

Query: 64 IAQRNEG 71
            +  EG
Sbjct: 64 SLEAEEG 61

BLAST of MELO3C034693 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 50/73 (68.49%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 4  GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVE-------------EGVLNVENGKDEE 63
          GWRRKK  LEAEEGVVGG  RR WRRKK  LE E             EGVLNVENGKDEE
Sbjct: 4  GWRRKKASLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEE 63

BLAST of MELO3C034693 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 51/86 (59.30%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 4  GWRRKKL----------------WLEAEEGVVGGERRRPWRRKKASL----EVEEGVLNV 63
          GWRRKKL                WLEAEEGVVGGERRR WRR KAS       EEGVL  
Sbjct: 8  GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVL-- 67

Query: 64 ENGKDEEGRKSWRIYWRKEKIAQRNE 70
          ENGK EE RKSWRIYWR  K  +R E
Sbjct: 68 ENGKAEEVRKSWRIYWRGRKSRRRME 91

BLAST of MELO3C034693 vs. ExPASy TrEMBL
Match: A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   RSCGWRRKKL--------WLEAEEGVVGGERRRPWRRKKASLEVEEGVL 42
           RSCGWRRKKL        WLEAEEGVVGGERRR W+RKKASLE EEGV+
Sbjct: 332 RSCGWRRKKLWLETEDDDWLEAEEGVVGGERRRRWKRKKASLEAEEGVV 380

BLAST of MELO3C034693 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 4   GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVEEGVLNVENGKDEEGRKSWRIYWRKEK 63
           GWR+KK  LEA+EG+VGG RRR           EEGVL  ENGK EEGRKSWRIYWR  K
Sbjct: 102 GWRQKKASLEAKEGIVGGGRRR---------RAEEGVL--ENGKAEEGRKSWRIYWRGRK 156

Query: 64  IAQRNE 70
             +R E
Sbjct: 162 SRRRME 156

BLAST of MELO3C034693 vs. ExPASy TrEMBL
Match: A0A5D3BFA0 (S-antigen protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15972G00010 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 4  GWRRKKLWLEAEEGVVGGERRRPWRRKKASLEVEEGVLNVENGKDEEGRKSWRIYWRKEK 63
          GWRRKKLWLEAEEGVVGG RRR WR KKA LE EEGV  V  G+    R+ WR   RK+ 
Sbjct: 4  GWRRKKLWLEAEEGVVGGGRRRGWRLKKAWLEAEEGV--VGGGR----RRGWR---RKKA 61

Query: 64 IAQRNEG 71
            +  EG
Sbjct: 64 SLEAEEG 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063229.17.9e-1668.49lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [... [more]
KAA0034559.18.2e-1359.3050S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p... [more]
TYK08201.13.8e-1075.5140S ribosomal protein S15-4 [Cucumis melo var. makuwa][more]
KAA0025306.19.4e-0960.61hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa][more]
TYJ97125.12.1e-0861.19S-antigen protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTI73.8e-1668.49Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G... [more]
A0A5D3CCS94.0e-1359.3050S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5D3C8N21.8e-1075.5140S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SHI44.5e-0960.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BFA01.0e-0861.19S-antigen protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034693.1MELO3C034693.1mRNA