MELO3C033144 (gene) Melon (DHL92) v4

Overview
NameMELO3C033144
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlial fibrillary acidic protein-like
Locationchr08: 27758253 .. 27759667 (+)
RNA-Seq ExpressionMELO3C033144
SyntenyMELO3C033144
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAGACTTTCAGATCGTTAAATCATTGTCGAATCCAAGGCAGAGGAAAATTCTTCAACTGTGCTCCTATGCTTTTCATTTGGATTTCCAGTCATATAAGGTATCCTAATAATTTTGGATATCCTCAAATAAAATTCAGCAGTTCGTGGAATAATACAAGAAACACTATCTGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCTAGAATTTGGAGTTTGGATGCAGTTTTTCAGCCATTTAACGACAGTAGAAGCAATTTGGAGAGCCCCTTGGATGCCCACAAGTCCTTTGACATATCGTTGTGGGAAATTGACTTTTATCCCGCTATTAGGCTTATGGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATCATGGTCAAAAAAATTTGCACCAGTTGTATGTGGGCTTGAAAATCGGGAATTCTCGTATGAGTCCAACATAGCGAATAATAAAATTCATGAAGCAGGCATGGAAATTTGTAAAGAAGATGAAGAGTTTGCGACATTGTGAGGGTACTACAGAACAGTATGATAATTGGAGAGCATCTAGAAATGGGATTACGGTTAATGCTATGCCAGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGGTTAAGAGAAATGAATTGTGTTTTGGTAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCTAGCAAGCTGTTAATACTCAAAGAGATTTGGACGAGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATGCAAGTGAGAAAAAAGAATGAGAGGTTATTATGGAATATTGCCGACTTACATGAAGAGACAGAAGCTAATAAGGTATGCATTACAAATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCTTTAGAATTTCAAAATGCATTACATGAACAAGCCATGTCATCTTAACAGACCGCTATGGAAATCGAGGTTCTACAACATTCAATTAAAGAATACAAATCCCAGCTCATAGAAGCGGAAAGCAAAAATAGATTTTTGCAAAAAGTCGTTAACAGCTCTGAAAGCCAGTTGCTGATATGTTGCAAAGTAAGGAAGGTCGCAACAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATCGATTTTATGATGTGGAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGACGTTTTGGGTGCTGCCATTAG

mRNA sequence

ATGACAGAGACTTTCAGATCGTTAAATCATTGTCGAATCCAAGGCAGAGGAAAATTCTTCAACTGTGCTCCTATGCTTTTCATTTGGATTTCCAGTCATATAAGGTATCCTAATAATTTTGGATATCCTCAAATAAAATTCAGCAGTTCGTGGAATAATACAAGAAACACTATCTGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCTAGAATTTGGAGTTTGGATGCAGTTTTTCAGCCATTTAACGACAGTAGAAGCAATTTGGAGAGCCCCTTGGATGCCCACAAGTCCTTTGACATATCGTTGTGGGAAATTGACTTTTATCCCGCTATTAGGCTTATGGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATCATGGTCAAAAAAATTTGCACCAGTTGTATGTGGGCTTGAAAATCGGGAATTCTCGTATGAGTCCAACATAGCGAATAATAAAATTCATGAAGCAGGCATGGAAATTTGTAAAGAAGATGAAGAGTTTGCGACATTGTGAGGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGGTTAAGAGAAATGAATTGTGTTTTGGTAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCTAGCAAGCTGTTAATACTCAAAGAGATTTGGACGAGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATGCAAGTGAGAAAAAAGAATGAGAGGTTATTATGGAATATTGCCGACTTACATGAAGAGACAGAAGCTAATAAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGACGTTTTGGGTGCTGCCATTAG

Coding sequence (CDS)

ATGAGAGGTTATTATGGAATATTGCCGACTTACATGAAGAGACAGAAGCTAATAAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGACGTTTTGGGTGCTGCCATTAG

Protein sequence

MRGYYGILPTYMKRQKLIRDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFLLIIGEYLGRFGCCH
Homology
[Close]
BLAST of MELO3C033144 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 9.0e-22
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+T++ELSHFL
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRFGC H
Sbjct: 241 GIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C033144 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ  VQAR L+QGVIPTR+T++ELSHFL
Sbjct: 70  KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTDKELSHFL 129

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRFGC H
Sbjct: 130 GIIGQCLGRFGCYH 143

[Close]
BLAST of MELO3C033144 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 7.6e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+T++ELSHFL
Sbjct: 392 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 451

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRF C H
Sbjct: 452 GIIGQCLGRFRCYH 465

[Close]
BLAST of MELO3C033144 vs. NCBI nr
Match: KAA0043019.1 (uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 19 RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
          +DEYETLR KYD A GQMERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+TNRELSHFL
Sbjct: 9  KDEYETLRRKYDYAIGQMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSHFL 68

Query: 79 LIIGEYLG 87
           IIG+YLG
Sbjct: 69 GIIGQYLG 76

[Close]
BLAST of MELO3C033144 vs. NCBI nr
Match: TYK05803.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 8.4e-20
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 19 RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
          +DEYETLR KYD   G+MERGA+KL Q+ RMADQ SVQAR L+QGVIPTR+TNRELSHFL
Sbjct: 9  KDEYETLRHKYDDVIGRMERGAEKLGQIARMADQFSVQARTLRQGVIPTRDTNRELSHFL 68

Query: 79 LIIGEYLGRFGC 91
           +I +YL RFGC
Sbjct: 69 GVIEQYLRRFGC 80

[Close]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.3e-22
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+T++ELSHFL
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRFGC H
Sbjct: 241 GIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ  VQAR L+QGVIPTR+T++ELSHFL
Sbjct: 70  KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTDKELSHFL 129

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRFGC H
Sbjct: 130 GIIGQCLGRFGCYH 143

[Close]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.7e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 19  RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
           +DEYETLR KYD A G+MERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+T++ELSHFL
Sbjct: 392 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 451

Query: 79  LIIGEYLGRFGCCH 93
            IIG+ LGRF C H
Sbjct: 452 GIIGQCLGRFRCYH 465

[Close]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match: A0A5A7TP68 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00980 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 19 RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
          +DEYETLR KYD A GQMERGA+KLRQM R+ADQ SVQAR L+QGVIPTR+TNRELSHFL
Sbjct: 9  KDEYETLRRKYDYAIGQMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSHFL 68

Query: 79 LIIGEYLG 87
           IIG+YLG
Sbjct: 69 GIIGQYLG 76

[Close]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match: A0A5D3C1I3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003090 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 19 RDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFL 78
          +DEYETLR KYD   G+MERGA+KL Q+ RMADQ SVQAR L+QGVIPTR+TNRELSHFL
Sbjct: 9  KDEYETLRHKYDDVIGRMERGAEKLGQIARMADQFSVQARTLRQGVIPTRDTNRELSHFL 68

Query: 79 LIIGEYLGRFGC 91
           +I +YL RFGC
Sbjct: 69 GVIEQYLRRFGC 80

The following BLAST results are available for this feature:
BLAST of MELO3C033144 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065294.19.0e-2275.68glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK27025.14.4e-2174.32glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0046606.17.6e-2174.32glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0043019.12.9e-2080.88uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa][more]
TYK05803.18.4e-2073.61glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C033144 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDD94.3e-2275.68Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUN12.2e-2174.32Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TXA13.7e-2174.32Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TP681.4e-2080.88Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3C1I34.1e-2073.61Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C033144 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033144.1MELO3C033144.1mRNA