MELO3C033064 (gene) Melon (DHL92) v4

Overview
NameMELO3C033064
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr08: 20102139 .. 20102615 (+)
RNA-Seq ExpressionMELO3C033064
SyntenyMELO3C033064
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

mRNA sequence

ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Protein sequence

MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK
Homology
BLAST of MELO3C033064 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 147/157 (93.63%), Postives = 151/157 (96.18%), Query Frame = 0

Query: 2   YDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 61
           +D+ +    +H GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 62  SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 121
           SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ
Sbjct: 319 SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 378

Query: 122 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 159
           RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK
Sbjct: 379 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

BLAST of MELO3C033064 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-45
Identity = 107/156 (68.59%), Postives = 120/156 (76.92%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MY++ IVP P+HR RVRVEEAELDEVYHNVEEVP TTQTQSQT YGS MTMMPTFG G+ 
Sbjct: 70  MYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLMTMMPTFGVGFV 129

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
                       I  L ++M V    + M     A+GNI NICIMKHLQMYQIDKSTNKN
Sbjct: 130 ILRSVEDIMMQSIHRLHTWMSVHQLLTCM-DTDVAMGNIMNICIMKHLQMYQIDKSTNKN 189

Query: 121 QRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLS 157
           QRTKRTENNIE RV+V+NQL+ID+V+VVEHIDFLLS
Sbjct: 190 QRTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

BLAST of MELO3C033064 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-45
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 0

Query: 1  MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
          MYDLPIVPP +HRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1  MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61 DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALG 98
          DSEV TGYYDAGI PLSSYMDVGPSNSYMHGHGR  G
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYG 97

BLAST of MELO3C033064 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 95/125 (76.00%), Postives = 101/125 (80.80%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MYDL IVPPP+HRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 
Sbjct: 182 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 241

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
           DSEVGTGYYDAGISP S YMDVGPSN YMHGH R  G        K+L  Y+  +ST   
Sbjct: 242 DSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHN-----KYLCTYRCIRSTRVP 301

Query: 121 QRTKR 126
            RT++
Sbjct: 302 TRTRK 301

BLAST of MELO3C033064 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-43
Identity = 96/130 (73.85%), Postives = 102/130 (78.46%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MYDL IVPPP+HRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 232

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
           DSEVGTGYYDAGISP S YMDVGPSN YMHGH R  G        K+L  Y+  +ST   
Sbjct: 233 DSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHN-----KYLCTYRCIRSTRVP 292

Query: 121 QRTKRTENNI 131
            RT++    I
Sbjct: 293 TRTRKPRGPI 297

BLAST of MELO3C033064 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 147/157 (93.63%), Postives = 151/157 (96.18%), Query Frame = 0

Query: 2   YDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 61
           +D+ +    +H GRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 62  SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 121
           SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ
Sbjct: 319 SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 378

Query: 122 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 159
           RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK
Sbjct: 379 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

BLAST of MELO3C033064 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.7e-46
Identity = 107/156 (68.59%), Postives = 120/156 (76.92%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MY++ IVP P+HR RVRVEEAELDEVYHNVEEVP TTQTQSQT YGS MTMMPTFG G+ 
Sbjct: 70  MYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLMTMMPTFGVGFV 129

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
                       I  L ++M V    + M     A+GNI NICIMKHLQMYQIDKSTNKN
Sbjct: 130 ILRSVEDIMMQSIHRLHTWMSVHQLLTCM-DTDVAMGNIMNICIMKHLQMYQIDKSTNKN 189

Query: 121 QRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLS 157
           QRTKRTENNIE RV+V+NQL+ID+V+VVEHIDFLLS
Sbjct: 190 QRTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

BLAST of MELO3C033064 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.8e-45
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 0

Query: 1  MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
          MYDLPIVPP +HRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1  MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61 DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALG 98
          DSEV TGYYDAGI PLSSYMDVGPSNSYMHGHGR  G
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYG 97

BLAST of MELO3C033064 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.3e-44
Identity = 95/125 (76.00%), Postives = 101/125 (80.80%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MYDL IVPPP+HRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 
Sbjct: 182 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 241

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
           DSEVGTGYYDAGISP S YMDVGPSN YMHGH R  G        K+L  Y+  +ST   
Sbjct: 242 DSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHN-----KYLCTYRCIRSTRVP 301

Query: 121 QRTKR 126
            RT++
Sbjct: 302 TRTRK 301

BLAST of MELO3C033064 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44
Identity = 96/130 (73.85%), Postives = 102/130 (78.46%), Query Frame = 0

Query: 1   MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 60
           MYDL IVPPP+HRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 232

Query: 61  DSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKN 120
           DSEVGTGYYDAGISP S YMDVGPSN YMHGH R  G        K+L  Y+  +ST   
Sbjct: 233 DSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHN-----KYLCTYRCIRSTRVP 292

Query: 121 QRTKRTENNI 131
            RT++    I
Sbjct: 293 TRTRKPRGPI 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041168.12.6e-7793.63serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0040602.11.2e-4568.59mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0049532.19.9e-4591.75GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0038951.11.1e-4376.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.11.4e-4373.85mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDY51.3e-7793.63Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3C2V95.7e-4668.59Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CXX34.8e-4591.75GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TBF85.3e-4476.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH236.9e-4473.85Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033064.1MELO3C033064.1mRNA