MELO3C032822.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032822.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionlysM domain receptor-like kinase 4
Locationchr07: 23195294 .. 23195613 (+)
RNA-Seq ExpressionMELO3C032822.jh1
SyntenyMELO3C032822.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAATCTCTCCTACAAAATCAACGCCGACAATAACTTCTGATTGACTCCACCTCCAAATTTCAAAATCACCACTTCCCATTTTCCAATCCCTCGAAATGGCTAATCCCACTTTAATCCCAATCAATCTCTCCGTCATCATCCATGTCGCTTTCCCCATCTTCTGCAAGTGCCCAAATCCCACCCAACTCCAAATTGGGTACAAACATATCAGAAATCACAGCCGTGAAAATTGGCCAAACCCGCAGTCATTTAACACAATTTTCATCAAGGAGAATCATCCAACCACCCCTCGCCTGTCTCTGTGCTCTTTAAACTGA

mRNA sequence

GGTGAATCTCTCCTACAAAATCAACGCCGACAATAACTTCTGATTGACTCCACCTCCAAATTTCAAAATCACCACTTCCCATTTTCCAATCCCTCGAAATGGCTAATCCCACTTTAATCCCAATCAATCTCTCCGTCATCATCCATGTCGCTTTCCCCATCTTCTGCAAGTGCCCAAATCCCACCCAACTCCAAATTGGGTACAAACATATCAGAAATCACAGCCGTGAAAATTGGCCAAACCCGCAGTCATTTAACACAATTTTCATCAAGGAGAATCATCCAACCACCCCTCGCCTGTCTCTGTGCTCTTTAAACTGA

Coding sequence (CDS)

ATGGCTAATCCCACTTTAATCCCAATCAATCTCTCCGTCATCATCCATGTCGCTTTCCCCATCTTCTGCAAGTGCCCAAATCCCACCCAACTCCAAATTGGGTACAAACATATCAGAAATCACAGCCGTGAAAATTGGCCAAACCCGCAGTCATTTAACACAATTTTCATCAAGGAGAATCATCCAACCACCCCTCGCCTGTCTCTGTGCTCTTTAAACTGA

Protein sequence

MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHIRNHSRENWPNPQSFNTIFIKENHPTTPRLSLCSLN
Homology
BLAST of MELO3C032822.jh1 vs. NCBI nr
Match: XP_008438594.1 (PREDICTED: lysM domain receptor-like kinase 4 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 4.61e-11
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHIRNHSRE---------------- 60
           +ANPTLIP NL + ++V FPIFCKCPNPTQLQ     + ++  +                
Sbjct: 153 IANPTLIPTNLDIGVNVVFPIFCKCPNPTQLQNRINFMVSYVIQPADTMSSIASRFGVQA 212

BLAST of MELO3C032822.jh1 vs. NCBI nr
Match: KAA0049311.1 (lysM domain receptor-like kinase 4 [Cucumis melo var. makuwa] >TYK17247.1 lysM domain receptor-like kinase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.19e-10
Identity = 35/79 (44.30%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHIRNHSRE---------------- 57
           +ANPTLIP NL + ++V FPIFCKCPNPTQLQ     + ++  +                
Sbjct: 148 IANPTLIPTNLDIGVNVVFPIFCKCPNPTQLQNRINFMVSYVIQPADTMSSIASRFGVQA 207

BLAST of MELO3C032822.jh1 vs. NCBI nr
Match: XP_011650952.1 (serine/threonine receptor-like kinase NFP [Cucumis sativus] >KGN56921.1 hypothetical protein Csa_011623 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.67e-09
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQ------IGY------------------- 57
           +ANPTLI  NLS+ + V FPIFCKCPNPTQL+      I Y                   
Sbjct: 150 IANPTLIATNLSIGVDVVFPIFCKCPNPTQLRNRVNFMISYVIQPADTLSSIASRFGVQT 209

BLAST of MELO3C032822.jh1 vs. NCBI nr
Match: KAF3456904.1 (hypothetical protein FNV43_RR01558 [Rhamnella rubrinervis])

HSP 1 Score: 54.3 bits (129), Expect = 2.59e-06
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHI 38
           + NPTL+  NL++ ++V FPIFCKCPN TQLQ G  H+
Sbjct: 145 VVNPTLVATNLTIGVNVVFPIFCKCPNSTQLQNGVNHL 182

BLAST of MELO3C032822.jh1 vs. NCBI nr
Match: XP_041025192.1 (LOW QUALITY PROTEIN: serine/threonine receptor-like kinase NFP [Juglans microcarpa x Juglans regia])

HSP 1 Score: 53.1 bits (126), Expect = 6.63e-06
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQ 32
           + NPTL+P NLS+ ++V FPIFCKCPN TQLQ
Sbjct: 146 VVNPTLVPTNLSIGVNVIFPIFCKCPNSTQLQ 177

BLAST of MELO3C032822.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AWS0 (lysM domain receptor-like kinase 4 OS=Cucumis melo OX=3656 GN=LOC103483654 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.23e-11
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHIRNHSRE---------------- 60
           +ANPTLIP NL + ++V FPIFCKCPNPTQLQ     + ++  +                
Sbjct: 153 IANPTLIPTNLDIGVNVVFPIFCKCPNPTQLQNRINFMVSYVIQPADTMSSIASRFGVQA 212

BLAST of MELO3C032822.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U6Q1 (LysM domain receptor-like kinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00980 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.06e-10
Identity = 35/79 (44.30%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQIGYKHIRNHSRE---------------- 57
           +ANPTLIP NL + ++V FPIFCKCPNPTQLQ     + ++  +                
Sbjct: 148 IANPTLIPTNLDIGVNVVFPIFCKCPNPTQLQNRINFMVSYVIQPADTMSSIASRFGVQA 207

BLAST of MELO3C032822.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LA24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144110 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.29e-09
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQ------IGY------------------- 57
           +ANPTLI  NLS+ + V FPIFCKCPNPTQL+      I Y                   
Sbjct: 150 IANPTLIATNLSIGVDVVFPIFCKCPNPTQLRNRVNFMISYVIQPADTLSSIASRFGVQT 209

BLAST of MELO3C032822.jh1 vs. ExPASy TrEMBL
Match: A0A5J5ACV9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035439 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.21e-06
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQ 32
           + NPTLIP NL++ ++V FPIFCKCPN TQLQ
Sbjct: 144 VVNPTLIPTNLTIGVNVIFPIFCKCPNRTQLQ 175

BLAST of MELO3C032822.jh1 vs. ExPASy TrEMBL
Match: A0A7N2R6D2 (Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.21e-06
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   MANPTLIPINLSVIIHVAFPIFCKCPNPTQLQ 32
           + NPTL+P NLS+ + V FP+FCKCPN TQLQ
Sbjct: 148 LVNPTLVPTNLSIGVTVLFPVFCKCPNTTQLQ 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438594.14.61e-1143.37PREDICTED: lysM domain receptor-like kinase 4 [Cucumis melo][more]
KAA0049311.12.19e-1044.30lysM domain receptor-like kinase 4 [Cucumis melo var. makuwa] >TYK17247.1 lysM d... [more]
XP_011650952.12.67e-0946.34serine/threonine receptor-like kinase NFP [Cucumis sativus] >KGN56921.1 hypothet... [more]
KAF3456904.12.59e-0657.89hypothetical protein FNV43_RR01558 [Rhamnella rubrinervis][more]
XP_041025192.16.63e-0668.75LOW QUALITY PROTEIN: serine/threonine receptor-like kinase NFP [Juglans microcar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AWS02.23e-1143.37lysM domain receptor-like kinase 4 OS=Cucumis melo OX=3656 GN=LOC103483654 PE=4 ... [more]
A0A5A7U6Q11.06e-1044.30LysM domain receptor-like kinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0LA241.29e-0946.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144110 PE=4 SV=1[more]
A0A5J5ACV98.21e-0668.75Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035439 PE=4 SV=1[more]
A0A7N2R6D28.21e-0665.63Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032822.jh1.t1MELO3C032822.jh1.t1mRNA