MELO3C032662.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032662.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pre-mRNA-splicing factor CWC25-like protein
Location	chr07: 9976987 .. 9981136 (+)
RNA-Seq Expression	MELO3C032662.jh1
Synteny	MELO3C032662.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCTGCATGCGTTTGGTAAATTGACATCGATTGATTTAAACAATTGATTTTAGGTCCAACCTATAAACTGAATCCCTTTCGGGCCAATGAAAGGATGAGGTTTCTTGTTCAAGGCTTGGATTTAGTTCTTAAGGGAACAACCTATCTACTAACCCTAAAGAAGGCACGAGTAAAAAACACGAGAGATTGCCCTAAAATTGGAAGGCTTATTGGGCCACTCTGTTGTGCTATCCTCACCTATACAGATCTAAGGATAATCATATTTGAATAAAAATTCATAATTAGCTCGGGATTAAGATTAAGTTCATAATCGACGTGCAGAGATGGAGATTATGAACTCAAATAAAAGTTCATAATTACCACCCACGATTTCATCTCAAACTCAAATTTCCTTCCTTTCTATATGTCTTGTTAGAAATACAAAAGAAAAGTAGAAATCGAACGGACAAAATTTTGTTGTTGGAGCAAAAATTTTCGAGCCAATGTTCTATCGTAAATCCTAATTCTCCCTCAAATTTCTTGATATCATATTCTCTATCTCTCCTTCTTTCTTTTGTTACCTATGTTTCAATTTTTTTAGGTTTCAAAAGAAGATATGGGAGAACTAATTTGCATGACTTTGGTCGTTGTTGCCGGCAACAATATTGGCAAAATACTTCAGAAGAAGGCCACCGTCGTTTTCTTTTTCACATTTTCTAAGTCATTTAATTTCATTCGATTCGTTTGTTATTCTTTCTTGAGTTTTCTGATCGCTAGCAGTATGGTGTTTCTTTGATTCTCAATTTTTCGGATTTCATTAAGGAAGTATGAGAGATTGGATTTGCTTTATGAATTGGGTTTGGTAGTTGGCAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCAGTGAGCCATCTAGTTCCAAGGTACTATTGCGTTTTTTCGCTGATTTGTGTGCTTTGGCTATCTCTCTTTGTATTGTTCAATTATGATGTTTGTTGGATACTGGAGCTCTGTTTGAGGATAAGCCTCATTCTTCCAATGATGCATGGAGGAAACTCCATTCTGATCCTTTGCTCATCATTTAACAACGTGACAATAAGCTCTTGCTCGCGTAAAAAACAATCCTTTGGCTACGATTTGCAAAACTGTAACTAGCTTTTGATCTCCTTTTATGGCTTTAACCTCACTAAACCTTACAAGTTTTATTCTTATAACATGGGCTATGGAAATTTTATGTCGAAACATCTTTCTTCCTTTCATTATTTTGTAGAGAGATTTTTTGAACTTCTCTCTTAGTTTGTTCATGGACACTTTACTTGGTGGCCTATCAAAATTCTAAGTTATTCTTTTGAGTTGATGTGATGAATTTCTCTGTATATCTCTCACTCTTTTGATAGGAGCTAAAGATGAATCTTTGAACAAAAAGTTTTTTTTTCTATATTCTTGCTATGTCAATCTTGGCATACAGTAAATGCTTAACATCATTATTTAATCTGTCATTGATTTTTGTTGTAGAGATTAAACTTATCCCTATCCAAAGTAGATTAGAAGACAAGAAAGTAATGGTCGTTTAGTAAATATTTTAGTCTAAAATGGACAAGGTAAAATAGTGAATACAATTATATTGAACGAGAAATGATAGATTTCTAGGATTTCTCAAGTTCACAGTGGATTTCTAGGATTTTCTCCAACAATTTTAAATAAATAAACAACCAAATCTTCGAAAATTTTCAATAAATAAACATTTTCTAACACTAACTTTACTGAAAGCAAGGAGCCTGACCAATCCCTTTACATTTTTCTATTACCCATTTCTTCTCAATTTTGAAATATAAAAATGCATTCAAGGTGTTTTTATAAACGTTGCTCTGATGGAGTTTTGGGTTTTGGGTTTTGTTTCTTATGTGCTTATTGGTTGAGACTTTTTGTGTTTTTGGTTTGATTTTGATCTTTAATTCTAATGGTAAATTGATCTTATAGTGTTGAAAGATTTAGAGTATTTGATTTTATGGTGTTGAATATAGTTGTGTTTAATGATATGTGATTATATGTGTTGTAGTTCTATATGGAAGTGTTGAAAATTGCATGTTGACATTTTAGGTGTTGATCTTGTGTGCATTGTAGGTGAAATAGAAATATAATATTTGCCATGGAGGATAACATTTGCAAAATCATGCTTTCTTTGGTTTTTGGCTTTTGGTTTTTGCTTCGTCTTTGTGCAATTTGCTTGGTAGCTTGAAAGATGGAAATGACCATATAGATAGATGGCCTAGCGATCATTGAAGGGTACCTTGCATTTTTTGTGCTTGATCTATGTATATGATATACTATGATCATGAATTCTCTGTACCATGTTAACTTGTTTAAAGTTGGTTGTAATAGTCATATTGTATGCGTGGTCAAAGTCTCTATCAATTGTCATTTCCTAGCTTACTAGTTTATCCGTTTCAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGTTGCCCTTGAACCTACAGATACAGTAGAAGTGTATTTTCGATCATAAGATGAGGATACATCAGTAGCACACAGAGACATCAAAGCCCGATTTCTTTTAAATCTTTTGCAGTTTTTTAAACGATGTATATATGGAAAGGTTTATTTTTTGGATTTTTCTTTCCTTATGTTTGTGGGAATTTCTTGTTAATGCTAGGTCCACATCCTCATTTCAACCTAATTTCCAAAGAAACAACCTTCTCTAGTGCTGCAAAGTTCTCGGTTAATGTAATTTTGCCTTGAATCTTCAAAACTCTTGTGTATATCAGCTTTGGTTTGTAGTTGGATAGGACCAATGCCATAAACATGCTTGTACGTTTCTCTCCTTTGGTTGTCCAAACTCGACTTCATAGTTTAACCTTTCCAGCTTATATTAATTCAATGTTGAAATAGTATCAAGTGTCTCTGTTTATAATCTTGCTATCCAAAAAATAAAATACCATAGATTAACATTTTATGCTTCTTCTTCATTTATGTTTTATATATTTGATATTAAGCTCTTTTTCTATGTGTGGAATAGAATAACCATAGATTAACAAGTGCTTTGCTTTAATTGAACAAGTGAACTAGGGGCCTCTGGTTATTGATGTGATTTGTTAAGATGAAGAAGGCCTTTCATCAAATTGTTAAAGATTTGTAAGCTATCTTTTTCGCTTGTGATGCTTTGATGGCATCATTTAAATTTCTTGACTTTAAGTCAAGACACATGATTACTTGTTTTTGCAATCTAATTAACTTTCGTTAAATGATCATTGCTAAAGACTTTAAATTAGTGGTCTTGTTTCACAAAAATCATTTTTATTCAATTATTCATTGATTTTGTCAAATATACTTTATGCATTACTCGTTAGATCTTCCTAATAGGTTCCCTCTTCTTTTAATGTAGAAAGAGAGGTAAATATAAGATTGTTCAAGATTCTTAAAATAGAGTAGTAGGTATGTTTTTTTTGGCTCATCTGTTTTGTTATTGCAAATTGATATCGTATTGCTTCAATTATCTTGTCTTGAAGAATTATATTAGAGTGTGTAAGATTTGTTGTACATTTCCTCAATGATATACCTTAAGTCAGATATAACTGTTCTTTTGCCTCTAGCTATTTGATGACCTTTTTTAAATTAATCTACTATCTTTCAGATGACAGATCTTCTTTGATTTTCAATACATGACTCCAATGGGAGGGACCAAGCTTTTCATGAAAGCTATTTGTACTTTTTTATTCAATTGACCTGAATATTTAACTTCTTTTTTTCCATCATATGTTTGTTAGTGCTCTATAAATATAAAATGATAAAAATGTTCTTTTAGCTTTTACACAATAGTTTCAATAAACGTTTATTTTGATATTGCTTGTAGAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACCAAACTATTGTTGAAGGTTAAAAACTGAGAAGACGTTTAGAATTTCTTGTTTAAGTTTTGTATTAAGATCTTGTTTCATGTACAGTTGTAGAATGTACACAAACACAATATTAAGATGTTATTTTGTGTATACAGATG

mRNA sequence

ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCTGCATGCGTTTGTTGGCAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCAGTGAGCCATCTAGTTCCAAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGTTGCCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACCAAACTATTGTTGAAGGTTAAAAACTGAGAAGACGTTTAGAATTTCTTGTTTAAGTTTTGTATTAAGATCTTGTTTCATGTACAGTTGTAGAATGTACACAAACACAATATTAAGATGTTATTTTGTGTATACAGATG

Coding sequence (CDS)

ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCTGCATGCGTTTGTTGGCAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCAGTGAGCCATCTAGTTCCAAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGTTGCCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACCAAACTATTGTTGAAGGTTAA

Protein sequence

MDWFWPHLLIGPSFCLTRYDPLGALHAFVGKASNSDGFKSQETLPSSTIAATASEPSSSKIVNRIQKLRKQVALEPTDTVEVMIEDISGGKRSDCVDNQTIVEG

Homology

[Close]

BLAST of MELO3C032662.jh1 vs. NCBI nr
Match: KAA0034965.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.33e-08
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 18 RYDPLGALHAFVGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          R + L  L   VGKASNSDGFKS ETLPSSTIAATA+EPSSSK
Sbjct: 36 RLNLLYELGLEVGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. NCBI nr
Match: KAA0037864.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 7.34e-08
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 29 VGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          VGKASNSDGFKS ETLPSSTIAATA+EPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. NCBI nr
Match: TYK21842.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.72e-07
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 18 RYDPLGALHAFVGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          R + L  L   VGKASNSDGFKS ETLPSSTIA TA+EPSSSK
Sbjct: 36 RLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. NCBI nr
Match: XP_016902821.1 (PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo])

HSP 1 Score: 52.0 bits (123), Expect = 1.46e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 29  VGKASNSDGFKSQETLPSSTIAATASEPSSSKI 61
           VGKASN DGFKS ETL SSTIAATA+EPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of MELO3C032662.jh1 vs. NCBI nr
Match: XP_008462005.1 (PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo])

HSP 1 Score: 52.0 bits (123), Expect = 1.58e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 29  VGKASNSDGFKSQETLPSSTIAATASEPSSSKI 61
           VGKASN DGFKS ETL SSTIAATA+EPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T0H4 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00290 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.10e-08
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 18 RYDPLGALHAFVGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          R + L  L   VGKASNSDGFKS ETLPSSTIAATA+EPSSSK
Sbjct: 36 RLNLLYELGLEVGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CF18 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001190 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.55e-08
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 29 VGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          VGKASNSDGFKS ETLPSSTIAATA+EPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DE30 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00040 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.35e-08
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 18 RYDPLGALHAFVGKASNSDGFKSQETLPSSTIAATASEPSSSK 60
          R + L  L   VGKASNSDGFKS ETLPSSTIA TA+EPSSSK
Sbjct: 36 RLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK 78

[Close]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E3L4 (uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.07e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 29  VGKASNSDGFKSQETLPSSTIAATASEPSSSKI 61
           VGKASN DGFKS ETL SSTIAATA+EPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CFU5 (uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.65e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 29  VGKASNSDGFKSQETLPSSTIAATASEPSSSKI 61
           VGKASN DGFKS ETL SSTIAATA+EPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

The following BLAST results are available for this feature:

BLAST of MELO3C032662.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034965.1	4.33e-08	76.74	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320...	[more]
KAA0037864.1	7.34e-08	93.75	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818...	[more]
TYK21842.1	1.72e-07	74.42	pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]	[more]
XP_016902821.1	1.46e-05	84.85	PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo]	[more]
XP_008462005.1	1.58e-05	84.85	PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo]	[more]

BLAST of MELO3C032662.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0H4	2.10e-08	76.74	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CF18	3.55e-08	93.75	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DE30	8.35e-08	74.42	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E3L4	7.07e-06	84.85	uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CFU5	7.65e-06	84.85	uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MELO3C032662.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032662.jh1.t1	MELO3C032662.jh1.t1	mRNA