MELO3C032216 (gene) Melon (DHL92) v4

Overview
NameMELO3C032216
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionG-box binding factor 1 isoform 1
Locationchr06: 27241335 .. 27242927 (+)
RNA-Seq ExpressionMELO3C032216
SyntenyMELO3C032216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACGGATCTTAAATGTCGGTTTTTAAAATACGGATCTTTAATGTAGGTTTTAAACCGACATCAAAGATGAGGGTACAATGTCGGTTTTAAACCGACATTAAAGACATGATTCTTTGAAAACCGACATTGAAGGTACATTTATTGATAACTTTAATTTTTTGATTTAATATAAAGCAATAATTTTACCAAATCTTCTCCATTACTTTTCTTCTCTCCCCAGAACTCTTTCTTTCATGCCATCGTTTCATCATCCTCTAAACCTTAAAATCATCACTGTCGTGCTCCAACATCCATCGTTGCGCTCGACGCTCCACCATCCGCTGGTTAGTCTCGCCATATCCTTAAAGTTTTTTATCATTTCCTCAAGTTTTCTTCTCTCTTCTTTCACATTCTCCCTATAAACGCTCCTCACGCCAAAATCCTTGAGATCCGTTCGCAAGTCCACTAGTATGATCAGGTATCCCGGTAATTTTTGTTTTGCTCGAGTGATCTTACCTATATGTTTTGGGATTGTAGTAGATTGGAAGCTGTGTTCTAATAGGTAGGTGTAGGTATTATATGTTAGATTTCCGATTTGGGATGTAAATTACATATGTAGAAATATGATCGATCACATTATTTTTTAGTATTTTTCCTGAAACTTACGATTAGGAATTTGGAAGAATTGAACCCTAAGACAGAATGATATTAATTTCTATGATTAGCGAGGATTATAGTGGTTTGATTTCAGCTGTGGTTGATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCTGAAACCTCCCTCTTCATCCCAGGTGATATAATTAACCTTCCTTCCTTTTGCCTATTTTCATTCCCAAGTTGTTGATACATTGATATTTTTTTACTTGTTACGCATAAGGAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAGTGCAGGTCTATCTATATGGTTTTTTGATTTCATACTAATTGTTGTTTGGATTCATAATCACCTAGAATAGTAAAATTCAAACACTTAAAATAGTAACGAAGATGTCGATGAATACTACTGGCTTAAAGTTTGGCCTCTTCTGTAACTGTAGGCTTATTATAGTGTTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTGCTTCTCCAACTCCCCACCCTTACATCTGGGGAGGTCAGGTAATTATAATTTTCTATTGTCCCTATGAAATTTTATGGAGTTTGATATTTTCCAGAGAGGAGAAGATAATAATGTTCCTATTTTCTTAATTTTATGTTATATTTTTCAGCATCCTTTGATGTTACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTAGGGAGTTTATGCCCATCCCAATATCATTGTGGTAATCACCCTTTTATATTATAGGCTAGTGGATTTTATTTATATTCAAATCAACGAATCTTTTTTTCTCCATAGTTTCATCTTAATATCATTTGCTCTTTACCTGACCATTCCTTCTTAAATACCCACAAAATCATTAGACCGAAATAGAAGGATTAAGTTAGTCCTTGATATAATTGTTCCTTTTTTTTTTCTTTTGTAGACTCCTGGCTCTGTTCCGAT

mRNA sequence

ATGAACACGGATCTTAAATGTCGCAATAATTTTACCAAATCTTCTCCATTACTTTTCTTCTCTCCCCAGAACTCTTTCTTTCATGCCATCGTTTCATCATCCTCTAAACCTTAAAATCATCACTGTCGTGCTCCAACATCCATCGTTGCGCTCGACGCTCCACCATCCGCTGCTGTGGTTGATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCTGAAACCTCCCTCTTCATCCCAGGCTTATTATAGTGTTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTGCTTCTCCAACTCCCCACCCTTACATCTGGGGAGGTCAGCATCCTTTGATGTTACCTTATGGGACTCCAACTCCTGGCTCTGTTCCGAT

Coding sequence (CDS)

ATGCCATCGTTTCATCATCCTCTAAACCTTAAAATCATCACTGTCGTGCTCCAACATCCATCGTTGCGCTCGACGCTCCACCATCCGCTGCTGTGGTTGATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCTGAAACCTCCCTCTTCATCCCAGGCTTATTATAGTGTTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTGCTTCTCCAACTCCCCACCCTTACATCTGGGGAGGTCAGCATCCTTTGATGTTACCTTATGGGACTCCAACTCCTGGCTCTGTTCCG

Protein sequence

MPSFHHPLNLKIITVVLQHPSLRSTLHHPLLWLMGTREEGTPSKTLKPPSSSQAYYSVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPTPGSVP
Homology
BLAST of MELO3C032216 vs. NCBI nr
Match: KAA0060604.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLLW---LMGTREEGTPSKTLKPPSSS-QAYY 60
          MPSFHHPLNLKIITVVLQHPSLRSTLHHPL+    L+G      P+ +    SSS QAYY
Sbjct: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLIGSCVLIGI----APAPSYPDWSSSVQAYY 60

Query: 61 SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPTP 96
          SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP P
Sbjct: 61 SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVP 95

BLAST of MELO3C032216 vs. NCBI nr
Match: TYK02267.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 71/95 (74.74%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLLWLMGTREEGTPSKTLKPPSSSQAYYSVGA 60
          MPSFHHPLNLKIITVVLQHPSLRSTLHHPL                       AYYSVGA
Sbjct: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPL-----------------------AYYSVGA 60

Query: 61 TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPTP 96
          TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP P
Sbjct: 61 TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVP 72

BLAST of MELO3C032216 vs. NCBI nr
Match: KAA0042213.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK26783.1 G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSSQAYYSVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP 93
          MGTREEGTPSKT KPPSSSQAYYS GATPPPFFASTI SPTPHPYIWGGQHPLMLPYGTP
Sbjct: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQHPLMLPYGTP 60

Query: 94 TP 96
           P
Sbjct: 61 VP 62

BLAST of MELO3C032216 vs. NCBI nr
Match: XP_011658003.1 (G-box-binding factor 1 isoform X1 [Cucumis sativus] >XP_011658004.1 G-box-binding factor 1 isoform X1 [Cucumis sativus] >XP_031743230.1 G-box-binding factor 1 isoform X1 [Cucumis sativus] >XP_031743231.1 G-box-binding factor 1 isoform X1 [Cucumis sativus] >KGN48813.1 hypothetical protein Csa_004118 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS----------------QAYYSVGATPPPFFASTIASPTPHP 93
          MGT EEGTPSKT KPPSSS                QAYY  GATPPPFFAST+ASPTPHP
Sbjct: 1  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 94 YIWGGQHPLMLPYGTPTP 96
          Y+WGGQHPLM PYGTP P
Sbjct: 61 YLWGGQHPLMSPYGTPVP 78

BLAST of MELO3C032216 vs. NCBI nr
Match: XP_031743232.1 (G-box-binding factor 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS----------------QAYYSVGATPPPFFASTIASPTPHP 93
          MGT EEGTPSKT KPPSSS                QAYY  GATPPPFFAST+ASPTPHP
Sbjct: 1  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 94 YIWGGQHPLMLPYGTPTP 96
          Y+WGGQHPLM PYGTP P
Sbjct: 61 YLWGGQHPLMSPYGTPVP 78

BLAST of MELO3C032216 vs. ExPASy Swiss-Prot
Match: P42774 (G-box-binding factor 1 OS=Arabidopsis thaliana OX=3702 GN=GBF1 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS---------------QAYYSVGATPPPFFASTIASPTPHPY 93
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

Query: 94 IWGGQHPLMLPYGTPTP 96
          +WG QH +M PYGTP P
Sbjct: 61 MWGAQHHMMPPYGTPVP 77

BLAST of MELO3C032216 vs. ExPASy Swiss-Prot
Match: Q99091 (Light-inducible protein CPRF3 OS=Petroselinum crispum OX=4043 GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 36/77 (46.75%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPP-----------------SSSQAYYSVGATPPPFFASTIASPTPH 93
          M   EEGTP K  KP                  SS QAYY  GA P  F+AST+ SP+PH
Sbjct: 1  MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYYG-GAAPAAFYASTVGSPSPH 60

BLAST of MELO3C032216 vs. ExPASy Swiss-Prot
Match: Q99089 (Common plant regulatory factor 1 OS=Petroselinum crispum OX=4043 GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 0

Query: 50 SSSQAYYSVGATPPPFFASTIAS-PTPHPYIWGGQHPLMLPYGTP 94
          ++ QAYY      PP+F   +AS  +PHPY+WG   P+M PYG P
Sbjct: 36 AAMQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVP 80

BLAST of MELO3C032216 vs. ExPASy TrEMBL
Match: A0A5A7UZZ1 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004820 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLLW---LMGTREEGTPSKTLKPPSSS-QAYY 60
          MPSFHHPLNLKIITVVLQHPSLRSTLHHPL+    L+G      P+ +    SSS QAYY
Sbjct: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLIGSCVLIGI----APAPSYPDWSSSVQAYY 60

Query: 61 SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPTP 96
          SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP P
Sbjct: 61 SVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVP 95

BLAST of MELO3C032216 vs. ExPASy TrEMBL
Match: A0A5D3BS81 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00680 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 71/95 (74.74%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPLLWLMGTREEGTPSKTLKPPSSSQAYYSVGA 60
          MPSFHHPLNLKIITVVLQHPSLRSTLHHPL                       AYYSVGA
Sbjct: 1  MPSFHHPLNLKIITVVLQHPSLRSTLHHPL-----------------------AYYSVGA 60

Query: 61 TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPTP 96
          TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP P
Sbjct: 61 TPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVP 72

BLAST of MELO3C032216 vs. ExPASy TrEMBL
Match: A0A5A7TG63 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00830 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSSQAYYSVGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTP 93
          MGTREEGTPSKT KPPSSSQAYYS GATPPPFFASTI SPTPHPYIWGGQHPLMLPYGTP
Sbjct: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQHPLMLPYGTP 60

Query: 94 TP 96
           P
Sbjct: 61 VP 62

BLAST of MELO3C032216 vs. ExPASy TrEMBL
Match: A0A0A0KGY0 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502020 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.2e-21
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS----------------QAYYSVGATPPPFFASTIASPTPHP 93
          MGT EEGTPSKT KPPSSS                QAYY  GATPPPFFAST+ASPTPHP
Sbjct: 1  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 94 YIWGGQHPLMLPYGTPTP 96
          Y+WGGQHPLM PYGTP P
Sbjct: 61 YLWGGQHPLMSPYGTPVP 78

BLAST of MELO3C032216 vs. ExPASy TrEMBL
Match: A0A1S3B1P8 (G-box-binding factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485031 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-21
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS----------------QAYYSVGATPPPFFASTIASPTPHP 93
          MGT EEGTPSKT KPPSSS                QAYY  GATPPPFFAST+ASPTPHP
Sbjct: 1  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 94 YIWGGQHPLMLPYGTPTP 96
          Y+WGGQHPLM PYGTP P
Sbjct: 61 YLWGGQHPLMSPYGTPLP 78

BLAST of MELO3C032216 vs. TAIR 10
Match: AT4G36730.1 (G-box binding factor 1 )

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-15
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS---------------QAYYSVGATPPPFFASTIASPTPHPY 93
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

Query: 94 IWGGQHPLMLPYGTPTP 96
          +WG QH +M PYGTP P
Sbjct: 61 MWGAQHHMMPPYGTPVP 77

BLAST of MELO3C032216 vs. TAIR 10
Match: AT4G36730.2 (G-box binding factor 1 )

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-15
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 34 MGTREEGTPSKTLKPPSSS---------------QAYYSVGATPPPFFASTIASPTPHPY 93
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

Query: 94 IWGGQHPLMLPYGTPTP 96
          +WG QH +M PYGTP P
Sbjct: 61 MWGAQHHMMPPYGTPVP 77

BLAST of MELO3C032216 vs. TAIR 10
Match: AT2G35530.1 (basic region/leucine zipper transcription factor 16 )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 42 PSKTLKPPSSSQAYYSVG---ATP-----------PPFFASTIASPTPHPYIWGGQHPLM 94
          P  +  PPSS +   +V    ATP           PP      +SP PHPY+WG QH +M
Sbjct: 19 PPSSTAPPSSQEPSSAVSAGMATPDWSGFQAYSPMPPPHGYVASSPQPHPYMWGVQH-MM 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060604.12.7e-3278.79G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa][more]
TYK02267.13.3e-3074.74G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa][more]
KAA0042213.11.1e-2593.55G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK26783.1 G-box-b... [more]
XP_011658003.11.1e-2069.23G-box-binding factor 1 isoform X1 [Cucumis sativus] >XP_011658004.1 G-box-bindin... [more]
XP_031743232.11.1e-2069.23G-box-binding factor 1 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
P427741.0e-1350.65G-box-binding factor 1 OS=Arabidopsis thaliana OX=3702 GN=GBF1 PE=1 SV=2[more]
Q990911.5e-0946.75Light-inducible protein CPRF3 OS=Petroselinum crispum OX=4043 GN=CPRF3 PE=2 SV=1[more]
Q990891.9e-0446.67Common plant regulatory factor 1 OS=Petroselinum crispum OX=4043 GN=CPRF1 PE=2 S... [more]
Match NameE-valueIdentityDescription
A0A5A7UZZ11.3e-3278.79G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BS811.6e-3074.74G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TG635.3e-2693.55G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0KGY05.2e-2169.23BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502020 PE=3 S... [more]
A0A1S3B1P86.7e-2169.23G-box-binding factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485031 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT4G36730.17.1e-1550.65G-box binding factor 1 [more]
AT4G36730.27.1e-1550.65G-box binding factor 1 [more]
AT2G35530.12.5e-0440.91basic region/leucine zipper transcription factor 16 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012900G-box binding protein, multifunctional mosaic regionPFAMPF07777MFMRcoord: 49..95
e-value: 1.1E-12
score: 48.3
IPR044827G-box-binding factor-likePANTHERPTHR45967G-BOX-BINDING FACTOR 3-RELATEDcoord: 34..95
NoneNo IPR availablePANTHERPTHR45967:SF20G-BOX-BINDING FACTOR 1coord: 34..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032216.1MELO3C032216.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding