MELO3C032180 (gene) Melon (DHL92) v4

Overview
NameMELO3C032180
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr06: 24459030 .. 24460046 (+)
RNA-Seq ExpressionMELO3C032180
SyntenyMELO3C032180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACCTTAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGAAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCAGCAACAACTGTAATTGATTGTAGAATTAAGATACTGAAGCGAACATTTCAGGCCATTGCCGAAATGCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGTAATTGGGTTAGGGTAAGGAAAATAATTTAAACGTCATAAAACGTTCACAATGTACATTTACTTAACAATTTTTCAATCAGTACTCATACGTGATATTTTTTTTCCCCGCAGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTTGGTCACGATAGGACGACCGGTCGGTTCGCTGAGACATTTGCAGACGTCGGGTCTAACGAACCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGAGTTCCTGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTACGAGATAG

mRNA sequence

ATGTCAACCTTAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGAAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCAGCAACAACTCGAACATTTCAGGCCATTGCCGAAATGCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGTAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTTGGTCACGATAGGACGACCGGTCGGTTCGCTGAGACATTTGCAGACGTCGGGTCTAACGAACCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGAGTTCCTGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTACGAGATAG

Coding sequence (CDS)

ATGTATCATTGCGGAGAAGGAATTATTTGTAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTTGGTCACGATAGGACGACCGGTCGGTTCGCTGAGACATTTGCAGACGTCGGGTCTAACGAACCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGAGTTCCTGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGA

Protein sequence

MYHCGEGIICNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
Homology
[Close]
BLAST of MELO3C032180 vs. NCBI nr
Match: KAA0048405.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 5.5e-44
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 88  NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGME 147

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           T++S PCTAR LTSRRTMYVHPDLLALQRVG D
Sbjct: 148 TKTSRPCTARELTSRRTMYVHPDLLALQRVGSD 180

[Close]
BLAST of MELO3C032180 vs. NCBI nr
Match: KAA0048382.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 5.5e-44
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKP PYYDELTYVFG DRTTGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 110 NWVRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGME 169

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Sbjct: 170 TRTSRPCTARELTSRRTMYVHLDLLALQRVGPD 202

[Close]
BLAST of MELO3C032180 vs. NCBI nr
Match: KAA0043158.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNK FPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 83  NWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGME 142

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Sbjct: 143 TRTSRPCTARELTSRRTMYVHLDLLALQRVGPD 175

[Close]
BLAST of MELO3C032180 vs. NCBI nr
Match: KAA0053666.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 3.1e-39
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMG  
Sbjct: 322 NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG 381

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
                P TAR LTSRRTMYVHPDLLALQRVG D
Sbjct: 382 NEDFPPVTARELTSRRTMYVHPDLLALQRVGLD 414

[Close]
BLAST of MELO3C032180 vs. NCBI nr
Match: KAA0043029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-38
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVR H AAKGLLNKPFPYYDELTYVFG DR TGRFA TF DVGSNEP  GYD FD+GME
Sbjct: 60  NWVRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEP-DGYDIFDIGME 119

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TRS  PCTARGLTSR+TMYVHPDLLALQRVGPD
Sbjct: 120 TRSFRPCTARGLTSRKTMYVHPDLLALQRVGPD 151

[Close]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match: A0A5A7TXW8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001010 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKP PYYDELTYVFG DRTTGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 110 NWVRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGME 169

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Sbjct: 170 TRTSRPCTARELTSRRTMYVHLDLLALQRVGPD 202

[Close]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match: A0A5A7U437 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001310 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 88  NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGME 147

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           T++S PCTAR LTSRRTMYVHPDLLALQRVG D
Sbjct: 148 TKTSRPCTARELTSRRTMYVHPDLLALQRVGSD 180

[Close]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match: A0A5A7TK19 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00210 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNK FPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGME
Sbjct: 83  NWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGME 142

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Sbjct: 143 TRTSRPCTARELTSRRTMYVHLDLLALQRVGPD 175

[Close]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match: A0A5A7UHF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00380 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMG  
Sbjct: 322 NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG 381

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
                P TAR LTSRRTMYVHPDLLALQRVG D
Sbjct: 382 NEDFPPVTARELTSRRTMYVHPDLLALQRVGLD 414

[Close]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match: A0A5A7TP77 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001090 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 11  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGME 70
           NWVR H AAKGLLNKPFPYYDELTYVFG DR TGRFA TF DVGSNEP  GYD FD+GME
Sbjct: 60  NWVRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEP-DGYDIFDIGME 119

Query: 71  TRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD 104
           TRS  PCTARGLTSR+TMYVHPDLLALQRVGPD
Sbjct: 120 TRSFRPCTARGLTSRKTMYVHPDLLALQRVGPD 151

The following BLAST results are available for this feature:
BLAST of MELO3C032180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048405.15.5e-4492.47retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048382.15.5e-4493.55retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0043158.13.5e-4392.47retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053666.13.1e-3987.10retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon p... [more]
KAA0043029.12.6e-3886.02retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C032180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXW82.6e-4493.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U4372.6e-4492.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TK191.7e-4392.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UHF71.5e-3987.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TP771.3e-3886.02Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C032180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 11..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032180.1MELO3C032180.1mRNA