Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTGTAGAGAAATAATTATTTGATAATTGGGTTAGAGTAAGGAAAATAATATAAACGTCACACGACGTTCGCAATGTACATTTACTTCACAATTTTTCTATCAGTACTCATAAGTGATTCTTTTTTTTTTCCCGCAGTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA
mRNA sequence
ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA
Coding sequence (CDS)
ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA
Protein sequence
MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTATQDDCGVTYTHPCQ
Homology
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match:
KAA0043029.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (618), Expect = 5.75e-79
Identity = 124/178 (69.66%), Postives = 131/178 (73.60%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIIS-------- 60
MAEKLPGC V ATT+IDCRIKTLKRTFQ IAEMRG CS FGWNDEEKCII
Sbjct: 2 MAEKLPGCQVRATTIIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIVEKELFDNW 61
Query: 61 ---HPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETG- 120
H AK LLNK F YYD+LTYVFGRDR TGRFA TF DVGSNEPDGYD F++GMET
Sbjct: 62 VRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEPDGYDIFDIGMETRS 121
Query: 121 ------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+TMY H DLL LQRVGP+RVDPRGR E SE WMLKAYIWRSTKQT+
Sbjct: 122 FRPCTARGLTSRKTMYVHPDLLALQRVGPDRVDPRGRGEFSETWMLKAYIWRSTKQTS 179
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match:
KAA0047893.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 219 bits (558), Expect = 7.18e-69
Identity = 117/177 (66.10%), Postives = 129/177 (72.88%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATT+IDCRIKTLKRTFQAIAEMRG ACS FGWNDEEKCI+
Sbjct: 2 MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDNW 61
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG--ME 120
SHP AK LLNK F YYD+LTYVFGRDR GRFA+TF DVGSNEP G YD F+MG E
Sbjct: 62 VRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGNE 121
Query: 121 TGRTMYA---------HHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+ +Y+ H DLL LQRVGP++VD RGR EV+E LK YIWRSTKQT+
Sbjct: 122 DFQPVYSQGVDISQDDHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 178
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match:
KAA0048382.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 211 bits (538), Expect = 2.65e-66
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATTVIDCRIKTLKR FQAIAEMRG ACS FGWNDEEKCI+
Sbjct: 52 MAEKLPGCQVRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMGMETG 120
SHP AK LLNK YYD+LTYVFGRDRTTGRFA+TF DVGSNEP G YD F+MGMET
Sbjct: 112 VRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETR 171
Query: 121 -------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSE 138
RTMY H DLL LQRVGP++VD RGR EVSE
Sbjct: 172 TSRPCTARELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match:
KAA0053666.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 218 bits (554), Expect = 4.42e-65
Identity = 119/179 (66.48%), Postives = 127/179 (70.95%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATTVID RIKTLKRTFQAIAEMR ACS FGWNDEEKCII
Sbjct: 264 MAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNW 323
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG---- 120
SHP AK LLNK F YYD+LTYVFGRDR TGRFA+TF DVGSNEP G YD F+MG
Sbjct: 324 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 383
Query: 121 ---------METGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+ + RTMY H DLL LQRVG ++VD R R EVSE LK YIWRSTKQT+
Sbjct: 384 DFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 442
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match:
KAA0032341.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19045.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 205 bits (522), Expect = 5.88e-64
Identity = 108/167 (64.67%), Postives = 119/167 (71.26%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELL 60
MAEKL GC VHATTVIDCRIKTLK TFQAI EM+G A S F W HP K LL
Sbjct: 52 MAEKLSGCRVHATTVIDCRIKTLKWTFQAIDEMQGPARSGF-W---------HPATKGLL 111
Query: 61 NKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNM-------------GMET 120
NKSF YYD+LTYVFGRDR TGRF +TF DVGSN+PDGY+ F+M G+
Sbjct: 112 NKSFSYYDELTYVFGRDRATGRFPETFADVGSNDPDGYEGFDMMDGNEEFRLCTARGLTC 171
Query: 121 GRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
RTMY HHD+ LQRVG +RVDPR R +VSERWMLKAYIW STKQT+
Sbjct: 172 RRTMYTHHDIFALQRVGLDRVDPRRRGKVSERWMLKAYIWHSTKQTS 208
BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TP77 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001090 PE=4 SV=1)
HSP 1 Score: 242 bits (618), Expect = 2.78e-79
Identity = 124/178 (69.66%), Postives = 131/178 (73.60%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIIS-------- 60
MAEKLPGC V ATT+IDCRIKTLKRTFQ IAEMRG CS FGWNDEEKCII
Sbjct: 2 MAEKLPGCQVRATTIIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIVEKELFDNW 61
Query: 61 ---HPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETG- 120
H AK LLNK F YYD+LTYVFGRDR TGRFA TF DVGSNEPDGYD F++GMET
Sbjct: 62 VRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEPDGYDIFDIGMETRS 121
Query: 121 ------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+TMY H DLL LQRVGP+RVDPRGR E SE WMLKAYIWRSTKQT+
Sbjct: 122 FRPCTARGLTSRKTMYVHPDLLALQRVGPDRVDPRGRGEFSETWMLKAYIWRSTKQTS 179
BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TWD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001700 PE=4 SV=1)
HSP 1 Score: 219 bits (558), Expect = 3.48e-69
Identity = 117/177 (66.10%), Postives = 129/177 (72.88%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATT+IDCRIKTLKRTFQAIAEMRG ACS FGWNDEEKCI+
Sbjct: 2 MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDNW 61
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG--ME 120
SHP AK LLNK F YYD+LTYVFGRDR GRFA+TF DVGSNEP G YD F+MG E
Sbjct: 62 VRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGNE 121
Query: 121 TGRTMYA---------HHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+ +Y+ H DLL LQRVGP++VD RGR EV+E LK YIWRSTKQT+
Sbjct: 122 DFQPVYSQGVDISQDDHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 178
BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TXW8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001010 PE=4 SV=1)
HSP 1 Score: 211 bits (538), Expect = 1.28e-66
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATTVIDCRIKTLKR FQAIAEMRG ACS FGWNDEEKCI+
Sbjct: 52 MAEKLPGCQVRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMGMETG 120
SHP AK LLNK YYD+LTYVFGRDRTTGRFA+TF DVGSNEP G YD F+MGMET
Sbjct: 112 VRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETR 171
Query: 121 -------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSE 138
RTMY H DLL LQRVGP++VD RGR EVSE
Sbjct: 172 TSRPCTARELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214
BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UHF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00380 PE=4 SV=1)
HSP 1 Score: 218 bits (554), Expect = 2.14e-65
Identity = 119/179 (66.48%), Postives = 127/179 (70.95%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
MAEKLPGC V ATTVID RIKTLKRTFQAIAEMR ACS FGWNDEEKCII
Sbjct: 264 MAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNW 323
Query: 61 --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG---- 120
SHP AK LLNK F YYD+LTYVFGRDR TGRFA+TF DVGSNEP G YD F+MG
Sbjct: 324 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 383
Query: 121 ---------METGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
+ + RTMY H DLL LQRVG ++VD R R EVSE LK YIWRSTKQT+
Sbjct: 384 DFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 442
BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7SS17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6384G00050 PE=4 SV=1)
HSP 1 Score: 205 bits (522), Expect = 2.85e-64
Identity = 108/167 (64.67%), Postives = 119/167 (71.26%), Query Frame = 0
Query: 1 MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELL 60
MAEKL GC VHATTVIDCRIKTLK TFQAI EM+G A S F W HP K LL
Sbjct: 52 MAEKLSGCRVHATTVIDCRIKTLKWTFQAIDEMQGPARSGF-W---------HPATKGLL 111
Query: 61 NKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNM-------------GMET 120
NKSF YYD+LTYVFGRDR TGRF +TF DVGSN+PDGY+ F+M G+
Sbjct: 112 NKSFSYYDELTYVFGRDRATGRFPETFADVGSNDPDGYEGFDMMDGNEEFRLCTARGLTC 171
Query: 121 GRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
RTMY HHD+ LQRVG +RVDPR R +VSERWMLKAYIW STKQT+
Sbjct: 172 RRTMYTHHDIFALQRVGLDRVDPRRRGKVSERWMLKAYIWHSTKQTS 208
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0043029.1 | 5.75e-79 | 69.66 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0047893.1 | 7.18e-69 | 66.10 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0048382.1 | 2.65e-66 | 69.33 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0053666.1 | 4.42e-65 | 66.48 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon p... | [more] |
KAA0032341.1 | 5.88e-64 | 64.67 | retrotransposon protein [Cucumis melo var. makuwa] >TYK19045.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TP77 | 2.78e-79 | 69.66 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TWD3 | 3.48e-69 | 66.10 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TXW8 | 1.28e-66 | 69.33 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UHF7 | 2.14e-65 | 66.48 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SS17 | 2.85e-64 | 64.67 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |