MELO3C031965.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031965.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr06: 11582190 .. 11582830 (-)
RNA-Seq ExpressionMELO3C031965.jh1
SyntenyMELO3C031965.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTGTAGAGAAATAATTATTTGATAATTGGGTTAGAGTAAGGAAAATAATATAAACGTCACACGACGTTCGCAATGTACATTTACTTCACAATTTTTCTATCAGTACTCATAAGTGATTCTTTTTTTTTTCCCGCAGTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

mRNA sequence

ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

Coding sequence (CDS)

ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

Protein sequence

MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTATQDDCGVTYTHPCQ
Homology
BLAST of MELO3C031965.jh1 vs. NCBI nr
Match: KAA0043029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (618), Expect = 5.75e-79
Identity = 124/178 (69.66%), Postives = 131/178 (73.60%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIIS-------- 60
           MAEKLPGC V ATT+IDCRIKTLKRTFQ IAEMRG  CS FGWNDEEKCII         
Sbjct: 2   MAEKLPGCQVRATTIIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIVEKELFDNW 61

Query: 61  ---HPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETG- 120
              H  AK LLNK F YYD+LTYVFGRDR TGRFA TF DVGSNEPDGYD F++GMET  
Sbjct: 62  VRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEPDGYDIFDIGMETRS 121

Query: 121 ------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
                       +TMY H DLL LQRVGP+RVDPRGR E SE WMLKAYIWRSTKQT+
Sbjct: 122 FRPCTARGLTSRKTMYVHPDLLALQRVGPDRVDPRGRGEFSETWMLKAYIWRSTKQTS 179

BLAST of MELO3C031965.jh1 vs. NCBI nr
Match: KAA0047893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (558), Expect = 7.18e-69
Identity = 117/177 (66.10%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATT+IDCRIKTLKRTFQAIAEMRG ACS FGWNDEEKCI+         
Sbjct: 2   MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDNW 61

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG--ME 120
             SHP AK LLNK F YYD+LTYVFGRDR  GRFA+TF DVGSNEP G YD F+MG   E
Sbjct: 62  VRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGNE 121

Query: 121 TGRTMYA---------HHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
             + +Y+         H DLL LQRVGP++VD RGR EV+E   LK YIWRSTKQT+
Sbjct: 122 DFQPVYSQGVDISQDDHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 178

BLAST of MELO3C031965.jh1 vs. NCBI nr
Match: KAA0048382.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 2.65e-66
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATTVIDCRIKTLKR FQAIAEMRG ACS FGWNDEEKCI+         
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMGMETG 120
             SHP AK LLNK   YYD+LTYVFGRDRTTGRFA+TF DVGSNEP G YD F+MGMET 
Sbjct: 112 VRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETR 171

Query: 121 -------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSE 138
                        RTMY H DLL LQRVGP++VD RGR EVSE
Sbjct: 172 TSRPCTARELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214

BLAST of MELO3C031965.jh1 vs. NCBI nr
Match: KAA0053666.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 4.42e-65
Identity = 119/179 (66.48%), Postives = 127/179 (70.95%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATTVID RIKTLKRTFQAIAEMR  ACS FGWNDEEKCII         
Sbjct: 264 MAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNW 323

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG---- 120
             SHP AK LLNK F YYD+LTYVFGRDR TGRFA+TF DVGSNEP G YD F+MG    
Sbjct: 324 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 383

Query: 121 ---------METGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
                    + + RTMY H DLL LQRVG ++VD R R EVSE   LK YIWRSTKQT+
Sbjct: 384 DFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 442

BLAST of MELO3C031965.jh1 vs. NCBI nr
Match: KAA0032341.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19045.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 205 bits (522), Expect = 5.88e-64
Identity = 108/167 (64.67%), Postives = 119/167 (71.26%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELL 60
           MAEKL GC VHATTVIDCRIKTLK TFQAI EM+G A S F W         HP  K LL
Sbjct: 52  MAEKLSGCRVHATTVIDCRIKTLKWTFQAIDEMQGPARSGF-W---------HPATKGLL 111

Query: 61  NKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNM-------------GMET 120
           NKSF YYD+LTYVFGRDR TGRF +TF DVGSN+PDGY+ F+M             G+  
Sbjct: 112 NKSFSYYDELTYVFGRDRATGRFPETFADVGSNDPDGYEGFDMMDGNEEFRLCTARGLTC 171

Query: 121 GRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
            RTMY HHD+  LQRVG +RVDPR R +VSERWMLKAYIW STKQT+
Sbjct: 172 RRTMYTHHDIFALQRVGLDRVDPRRRGKVSERWMLKAYIWHSTKQTS 208

BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TP77 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001090 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 2.78e-79
Identity = 124/178 (69.66%), Postives = 131/178 (73.60%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIIS-------- 60
           MAEKLPGC V ATT+IDCRIKTLKRTFQ IAEMRG  CS FGWNDEEKCII         
Sbjct: 2   MAEKLPGCQVRATTIIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIVEKELFDNW 61

Query: 61  ---HPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETG- 120
              H  AK LLNK F YYD+LTYVFGRDR TGRFA TF DVGSNEPDGYD F++GMET  
Sbjct: 62  VRLHHAAKGLLNKPFPYYDELTYVFGRDRATGRFAGTFVDVGSNEPDGYDIFDIGMETRS 121

Query: 121 ------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
                       +TMY H DLL LQRVGP+RVDPRGR E SE WMLKAYIWRSTKQT+
Sbjct: 122 FRPCTARGLTSRKTMYVHPDLLALQRVGPDRVDPRGRGEFSETWMLKAYIWRSTKQTS 179

BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TWD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001700 PE=4 SV=1)

HSP 1 Score: 219 bits (558), Expect = 3.48e-69
Identity = 117/177 (66.10%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATT+IDCRIKTLKRTFQAIAEMRG ACS FGWNDEEKCI+         
Sbjct: 2   MAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDNW 61

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG--ME 120
             SHP AK LLNK F YYD+LTYVFGRDR  GRFA+TF DVGSNEP G YD F+MG   E
Sbjct: 62  VRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGNE 121

Query: 121 TGRTMYA---------HHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
             + +Y+         H DLL LQRVGP++VD RGR EV+E   LK YIWRSTKQT+
Sbjct: 122 DFQPVYSQGVDISQDDHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 178

BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TXW8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001010 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.28e-66
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATTVIDCRIKTLKR FQAIAEMRG ACS FGWNDEEKCI+         
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMGMETG 120
             SHP AK LLNK   YYD+LTYVFGRDRTTGRFA+TF DVGSNEP G YD F+MGMET 
Sbjct: 112 VRSHPAAKGLLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETR 171

Query: 121 -------------RTMYAHHDLLTLQRVGPNRVDPRGRKEVSE 138
                        RTMY H DLL LQRVGP++VD RGR EVSE
Sbjct: 172 TSRPCTARELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214

BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UHF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00380 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.14e-65
Identity = 119/179 (66.48%), Postives = 127/179 (70.95%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC V ATTVID RIKTLKRTFQAIAEMR  ACS FGWNDEEKCII         
Sbjct: 264 MAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNW 323

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDG-YDEFNMG---- 120
             SHP AK LLNK F YYD+LTYVFGRDR TGRFA+TF DVGSNEP G YD F+MG    
Sbjct: 324 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 383

Query: 121 ---------METGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
                    + + RTMY H DLL LQRVG ++VD R R EVSE   LK YIWRSTKQT+
Sbjct: 384 DFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 442

BLAST of MELO3C031965.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SS17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6384G00050 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 2.85e-64
Identity = 108/167 (64.67%), Postives = 119/167 (71.26%), Query Frame = 0

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELL 60
           MAEKL GC VHATTVIDCRIKTLK TFQAI EM+G A S F W         HP  K LL
Sbjct: 52  MAEKLSGCRVHATTVIDCRIKTLKWTFQAIDEMQGPARSGF-W---------HPATKGLL 111

Query: 61  NKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNM-------------GMET 120
           NKSF YYD+LTYVFGRDR TGRF +TF DVGSN+PDGY+ F+M             G+  
Sbjct: 112 NKSFSYYDELTYVFGRDRATGRFPETFADVGSNDPDGYEGFDMMDGNEEFRLCTARGLTC 171

Query: 121 GRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTA 154
            RTMY HHD+  LQRVG +RVDPR R +VSERWMLKAYIW STKQT+
Sbjct: 172 RRTMYTHHDIFALQRVGLDRVDPRRRGKVSERWMLKAYIWHSTKQTS 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043029.15.75e-7969.66retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047893.17.18e-6966.10retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048382.12.65e-6669.33retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053666.14.42e-6566.48retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon p... [more]
KAA0032341.15.88e-6464.67retrotransposon protein [Cucumis melo var. makuwa] >TYK19045.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TP772.78e-7969.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TWD33.48e-6966.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXW81.28e-6669.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UHF72.14e-6566.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SS172.85e-6464.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031965.jh1.t1MELO3C031965.jh1.t1mRNA