MELO3C031554 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031554
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NB-ARC domain-containing protein
Location	chr05: 26192370 .. 26193423 (+)
RNA-Seq Expression	MELO3C031554
Synteny	MELO3C031554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAGGAAGGAGCTTGGATGATTGGATAAAAAATCTGTTAAAGAGAGATCAGAAAAAGTGCATTTGGAAGGATCAATTTGTTGGAAGGTTCTCCATTCAGAATTGGTAAATAAAAATGACTTTGTACATCTGAAGTATCTGGACCTTTATGATAATTCAAAATTTCAACATTTTGTCCATGAAAATAAAAAGCCATTGCAAAAATGCTTATCCAAATTGGAGTACTTAATTCTAAGGAACTCGGAAAATTTGGAGAGCATAATTCATGGTTATCATGGCGAATCTACTTTCAACAATTTGAAGAATGTAATCATACGGAATTGCAATAAATTAAAAACTCTCTTTTTTAACTGCACGTTGGATGACATTTTGAACCTAGAGGAAATTGTAATTAATTTTTGTGAGAAAATAGAAGTGACGATCATTGTGAAGGAAAATGAGGAGACAACCAACCACATTGAGTTAACTCATTTAAAGTACTTGTATCTAATCAGTTTACCACAACTTCATAAATTTTGGAGAAATGTGGACAATTAACCGTGGAAACAAGCACAAGCAATACCATCCGCATTGGTGAATCCCTTTTCAGTGAAGAGGTAATCGACACATTTTTCTATGTTTCTATATACATGTCTAAATTTAAGTACTTTTTTGTTCTTTTTATTGTTCCATCACAAGTTCCTTCTAACCTTTGTGGTTAGTAATGATATACAGGATCAAATTCTATCCTTATTTGTTTTAGAAGGCTCTTCTCTCAATGTAAACTACTGAAGTATATATAAATGCGTGCTAGGTGATGTTCCAGGTGATGTTCCATGAAAATTAAAAGAAGTTTATTAGATTTTTCCTATCCAGGGAAGCTCATTTGAAGTAATCATGATTTTACACAATTTGTTATGGTAATTTTAAAACATTATATACATTATATGTTGTTAATTGATGATATATGGTTAATTACGTTGTCTCAAAATTTGTAGATATCGCTTCCTAATTTGGAGAAGTTAAAAATTTGTAGTGGGAAGAATTTGAAAGATGATATGGAGCAATAA

mRNA sequence

ATGGAATCAGGAAGGAGCTTGGATGATTGGATAAAAAATCTGTTAAAGAGAGATCAGAAAAAGTGCATTTGGAAGGATCAATTTGTTGGAAGGAACTCGGAAAATTTGGAGAGCATAATTCATGGTTATCATGGCGAATCTACTTTCAACAATTTGAAGAATAAATGTGGACAATTAACCGTGGAAACAAGCACAAGCAATACCATCCGCATTGGTGAATCCCTTTTCAGTGAAGAGATATCGCTTCCTAATTTGGAGAAGTTAAAAATTTGTAGTGGGAAGAATTTGAAAGATGATATGGAGCAATAA

Coding sequence (CDS)

ATGGAATCAGGAAGGAGCTTGGATGATTGGATAAAAAATCTGTTAAAGAGAGATCAGAAAAAGTGCATTTGGAAGGATCAATTTGTTGGAAGGAACTCGGAAAATTTGGAGAGCATAATTCATGGTTATCATGGCGAATCTACTTTCAACAATTTGAAGAATAAATGTGGACAATTAACCGTGGAAACAAGCACAAGCAATACCATCCGCATTGGTGAATCCCTTTTCAGTGAAGAGATATCGCTTCCTAATTTGGAGAAGTTAAAAATTTGTAGTGGGAAGAATTTGAAAGATGATATGGAGCAATAA

Protein sequence

MESGRSLDDWIKNLLKRDQKKCIWKDQFVGRNSENLESIIHGYHGESTFNNLKNKCGQLTVETSTSNTIRIGESLFSEEISLPNLEKLKICSGKNLKDDMEQ

Homology

[Close]

BLAST of MELO3C031554 vs. NCBI nr
Match: TYK18360.1 (vat protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 46/66 (69.70%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 32  NSENLESIIHGYHGESTFNNLKNKCGQLTVETSTSNTIRIGESLFSEEISLPNLEKLKIC 91
           N E  E  +  YH    F     KCGQLTVETSTSNTI IGESLFSEE SLPNLEKLKIC
Sbjct: 395 NEEWEEERLSVYHNFINFAPKSEKCGQLTVETSTSNTISIGESLFSEEASLPNLEKLKIC 454

Query: 92  SGKNLK 98
           S KNLK
Sbjct: 455 SAKNLK 460

[Close]

BLAST of MELO3C031554 vs. NCBI nr
Match: XP_008455306.1 (PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 66/228 (28.95%), Postives = 77/228 (33.77%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MESG  LDDWIK LLKR +                                         
Sbjct: 742 MESGSCLDDWIKILLKRSEEVHLKGSICSKILHSELVDANDFVHLKYLYLYDDSKFQHFI 801

Query: 61  -------KKCIWKDQFVGRNS-ENLESIIHGYHGESTFNNLKN----------------- 98
                  +KC+ K +++  N+  NLES+IHGYHGES  NNLKN                 
Sbjct: 802 HEKNKPLRKCLSKLEYLNLNNLGNLESVIHGYHGESPLNNLKNVIISNCNKLKTLFFNYN 861

[Close]

BLAST of MELO3C031554 vs. NCBI nr
Match: XP_016901814.1 (PREDICTED: probable disease resistance protein At1g63360 isoform X1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 66/228 (28.95%), Postives = 77/228 (33.77%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MESG  LDDWIK LLKR +                                         
Sbjct: 742 MESGSCLDDWIKILLKRSEEVHLKGSICSKILHSELVDANDFVHLKYLYLYDDSKFQHFI 801

Query: 61  -------KKCIWKDQFVGRNS-ENLESIIHGYHGESTFNNLKN----------------- 98
                  +KC+ K +++  N+  NLES+IHGYHGES  NNLKN                 
Sbjct: 802 HEKNKPLRKCLSKLEYLNLNNLGNLESVIHGYHGESPLNNLKNVIISNCNKLKTLFFNYN 861

[Close]

BLAST of MELO3C031554 vs. NCBI nr
Match: KAE8651579.1 (hypothetical protein Csa_023428 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 57/215 (26.51%), Postives = 73/215 (33.95%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MES R LDDWIK LLKR +                                         
Sbjct: 776 MESERCLDDWIKTLLKRSEEVHLKGSICSKVLHDANEFLHLKYLYISDNLEFQHFIHEKN 835

Query: 61  ---KKCIWKDQFVG-RNSENLESIIHGYHGESTFNNLKN--------------------- 97
              +KC+ K +++     ENL++IIHGYH ES F+ LK+                     
Sbjct: 836 NPLRKCLPKLEYLYLEELENLKNIIHGYHRESLFSKLKSVVVTKCNKLEKLFFNCILDDI 895

[Close]

BLAST of MELO3C031554 vs. NCBI nr
Match: XP_011648792.1 (uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737307.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737308.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737309.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737310.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737311.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737312.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737313.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737314.1 uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737315.1 uncharacterized protein LOC101216156 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 57/215 (26.51%), Postives = 73/215 (33.95%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MES R LDDWIK LLKR +                                         
Sbjct: 747 MESERCLDDWIKTLLKRSEEVHLKGSICSKVLHDANEFLHLKYLYISDNLEFQHFIHEKN 806

Query: 61  ---KKCIWKDQFVG-RNSENLESIIHGYHGESTFNNLKN--------------------- 97
              +KC+ K +++     ENL++IIHGYH ES F+ LK+                     
Sbjct: 807 NPLRKCLPKLEYLYLEELENLKNIIHGYHRESLFSKLKSVVVTKCNKLEKLFFNCILDDI 866

[Close]

BLAST of MELO3C031554 vs. ExPASy TrEMBL
Match: A0A5D3D4A2 (Vat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00790 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-13
Identity = 46/66 (69.70%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 32  NSENLESIIHGYHGESTFNNLKNKCGQLTVETSTSNTIRIGESLFSEEISLPNLEKLKIC 91
           N E  E  +  YH    F     KCGQLTVETSTSNTI IGESLFSEE SLPNLEKLKIC
Sbjct: 395 NEEWEEERLSVYHNFINFAPKSEKCGQLTVETSTSNTISIGESLFSEEASLPNLEKLKIC 454

Query: 92  SGKNLK 98
           S KNLK
Sbjct: 455 SAKNLK 460

[Close]

BLAST of MELO3C031554 vs. ExPASy TrEMBL
Match: A0A1S4E0R8 (probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495494 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.8e-08
Identity = 66/228 (28.95%), Postives = 77/228 (33.77%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MESG  LDDWIK LLKR +                                         
Sbjct: 742 MESGSCLDDWIKILLKRSEEVHLKGSICSKILHSELVDANDFVHLKYLYLYDDSKFQHFI 801

Query: 61  -------KKCIWKDQFVGRNS-ENLESIIHGYHGESTFNNLKN----------------- 98
                  +KC+ K +++  N+  NLES+IHGYHGES  NNLKN                 
Sbjct: 802 HEKNKPLRKCLSKLEYLNLNNLGNLESVIHGYHGESPLNNLKNVIISNCNKLKTLFFNYN 861

[Close]

BLAST of MELO3C031554 vs. ExPASy TrEMBL
Match: A0A1S3C068 (probable disease resistance protein At4g27220 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495494 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.8e-08
Identity = 66/228 (28.95%), Postives = 77/228 (33.77%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MESG  LDDWIK LLKR +                                         
Sbjct: 742 MESGSCLDDWIKILLKRSEEVHLKGSICSKILHSELVDANDFVHLKYLYLYDDSKFQHFI 801

Query: 61  -------KKCIWKDQFVGRNS-ENLESIIHGYHGESTFNNLKN----------------- 98
                  +KC+ K +++  N+  NLES+IHGYHGES  NNLKN                 
Sbjct: 802 HEKNKPLRKCLSKLEYLNLNNLGNLESVIHGYHGESPLNNLKNVIISNCNKLKTLFFNYN 861

[Close]

BLAST of MELO3C031554 vs. ExPASy TrEMBL
Match: A0A0A0LLJ0 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G014830 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 57/215 (26.51%), Postives = 73/215 (33.95%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MES R LDDWIK LLKR +                                         
Sbjct: 747 MESERCLDDWIKTLLKRSEEVHLKGSICSKVLHDANEFLHLKYLYISDNLEFQHFIHEKN 806

Query: 61  ---KKCIWKDQFVG-RNSENLESIIHGYHGESTFNNLKN--------------------- 97
              +KC+ K +++     ENL++IIHGYH ES F+ LK+                     
Sbjct: 807 NPLRKCLPKLEYLYLEELENLKNIIHGYHRESLFSKLKSVVVTKCNKLEKLFFNCILDDI 866

[Close]

BLAST of MELO3C031554 vs. ExPASy TrEMBL
Match: A0A0A0LMT4 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G403680 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 62/210 (29.52%), Postives = 75/210 (35.71%), Query Frame = 0


Query: 1   MESGRSLDDWIKNLLKRDQ----------------------------------------- 60
           MES   LDDWIK LLKR +                                         
Sbjct: 747 MESEMCLDDWIKFLLKRSEEVHLEGSICSKVLNSELLDANGFLHLKNLWIFYNSDIQHFI 806

Query: 61  -------KKCIWKDQFVG-RNSENLESIIHGY-HGESTFNNLKN----KCGQL------- 98
                  +KC+ K +F+  +N ENLES+IHGY +GES  NNLKN     C +L       
Sbjct: 807 HEKNKPLRKCLSKLEFLYLKNLENLESVIHGYNNGESPLNNLKNVIVWNCNKLKTLFLNC 866

The following BLAST results are available for this feature:

BLAST of MELO3C031554 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18360.1	6.5e-13	69.70	vat protein [Cucumis melo var. makuwa]	[more]
XP_008455306.1	1.8e-07	28.95	PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Cucumis mel...	[more]
XP_016901814.1	1.8e-07	28.95	PREDICTED: probable disease resistance protein At1g63360 isoform X1 [Cucumis mel...	[more]
KAE8651579.1	1.4e-04	26.51	hypothetical protein Csa_023428 [Cucumis sativus]	[more]
XP_011648792.1	1.4e-04	26.51	uncharacterized protein LOC101216156 [Cucumis sativus] >XP_031737307.1 uncharact...	[more]

BLAST of MELO3C031554 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4A2	3.1e-13	69.70	Vat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00790 PE...	[more]
A0A1S4E0R8	8.8e-08	28.95	probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656...	[more]
A0A1S3C068	8.8e-08	28.95	probable disease resistance protein At4g27220 isoform X2 OS=Cucumis melo OX=3656...	[more]
A0A0A0LLJ0	7.0e-05	26.51	NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G014830 PE=4...	[more]
A0A0A0LMT4	1.6e-04	29.52	NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G403680 PE=4...	[more]

BLAST of MELO3C031554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031554.1	MELO3C031554.1	mRNA