MELO3C030434 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030434
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GDT1 family protein
Location	chr04: 8157110 .. 8158515 (-)
RNA-Seq Expression	MELO3C030434
Synteny	MELO3C030434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTAGCCCTAACTTTTAATTTAACTTTTTTCACCCAAATTTCTCTTCTCCTCCAATCTTTCGTCTGTCGCGCGGTAAGCTTGTTCGACATCGTCTCCTCCATCTGTGTGGTGTTCATCGTCACTTGCAAGCCGCCTCCGCCTCTTCTGTCTGTGTGTCGTTTCGTCGTTGCTCGTGTTCATCGTCGCTCGTTGCTCGTGGTTTCGCGTTCTGTTCGTGGTCGCTCGCAAGCAGCCGCCGCCTCTTACGTATGCACAGGTTCGTCCGCCGCCGCCGTTCAGAAACCACCTTTTTCGTCTGCACAAGTTAAATTACTTCATACTTCCGTCGTTCAGAGCCACCGCGCGTTCTACAGGTTCTTTGGTTAAATTGTAATTTGCTTAAATTAGTTCATACTTCAGAAGCAATTAGTAATCGAATGTGGAGTATTATTTTCAGAACTATGGAGAAAACTTTTGAAATTATGTTTTCTGATAATATTTCTTTGAAATATTATTTAACAGGCATGCTTTGTTAGCCAGAAATTGGGGAACTAGCAAAGTATTTTAGTAAATATTTTAGTAAGCTTTCTTTGAAATAATGGAGAAAACTTTTGAAATTATGTTTTCTGATAATAAGCTTTCTTTGAAATATTTTAGTAAAGCTTCCAATGAGTTTAAGGAACTAGCAAAGTAAACTAAATACTAGAGTTTTTTTCTTTAATTTATAATTTTTTTGGCATTGGCTGCTATGTTGTGTAATGACTCTTTTCTTGTGTGGAGCTTCTTGTTTGGCCATTCTGAAAGCTAAAAGAATTAGGGGTCAAAACACGAGCCCCAATTGATCATTTCCTTTTTCTTTTCTTCTTTAAATTCTAGTTTCAGTTCTTTCATAATGTTATTTTCGTATTTCCCTTCATTAGATTTTGTGGAGCAACAGTGACACAGTAGCTGCAAAAAAGGATGGTGTTGACTCAGAAGATCTTAATATTGACATGGACTCTTTTGGTAGCATGCTTGCTTTTAATGGATTATAATCTCTCTGAGTTGGTATATGCTGCTCTGTTTTGAAGGTCAAGAGAAGATTACAGTAGACTTAGGTAATGGGCCTTTTGCTATTGTTTGATGTGTTGTGCTTAATAGAGGTCTTGTCGTCTTCTTTTTCTTTACATAAAAAATAATAAGTGTTCTTTTTTACCAAGACATCAAATTTTTTTTTTTTTTTTGCATTTAATTGAATTGTTTGTTGTGTTGCGTCGAGCCATTGGAGCCTTTACTTCTTTATCAAACGAAGAATGAACTGTTTTAACTTTTAAGTCAGTCCATGTCCTTTACAAATTGTTTCACAATTTCGTTCATTTTATCGTAGTTTTTGTAGGACGAAAGAATTTAGACAAGTCATTGTCACGTCTTTTTTGATTTTTTAA

mRNA sequence

CCCCTAGCCCTAACTTTTAATTTAACTTTTTTCACCCAAATTTCTCTTCTCCTCCAATCTTTCGTCTGTCGCGCGGTAAGCTTGTTCGACATCGTCTCCTCCATCTGTGTGGTGTTCATCGTCACTTGCAAGCCGCCTCCGCCTCTTCTGTCTGTGTGTCGTTTCGTCGTTGCTCGTGTTCATCGTCGCTCGTTGCTCGTGGTTTCGCGTTCTGTTCGTGGTCGCTCGCAAGCAGCCGCCGCCTCTTACGTATGCACAGGTTCGTCCGCCGCCGCCGTTCAGAAACCACCTTTTTCGTCTGCACAAGTTAAATTACTTCATACTTCCGTCGTTCAGAGCCACCGCGCGTTCTACAGGCATGCTTTGTTAGCCAGAAATTGGGGAACTAGCAAAATTTTGTGGAGCAACAGTGACACAGTAGCTGCAAAAAAGGATGGTGTTGACTCAGAAGATCTTAATATTGACATGGACTCTTTTGGTAGCATGCTTGCTTTTAATGGATTATAATCTCTCTGAGTTGGTATATGCTGCTCTGTTTTGAAGGTCAAGAGAAGATTACAGTAGACTTAGGTAATGGGCCTTTTGCTATTGTTTGATGTGTTGTGCTTAATAGAGGTCTTGTCGTCTTCTTTTTCTTTACATAAAAAATAATAAGTGTTCTTTTTTACCAAGACATCAAATTTTTTTTTTTTTTTTGCATTTAATTGAATTGTTTGTTGTGTTGCGTCGAGCCATTGGAGCCTTTACTTCTTTATCAAACGAAGAATGAACTGTTTTAACTTTTAAGTCAGTCCATGTCCTTTACAAATTGTTTCACAATTTCGTTCATTTTATCGTAGTTTTTGTAGGACGAAAGAATTTAGACAAGTCATTGTCACGTCTTTTTTGATTTTTTAA

Coding sequence (CDS)

CCCCTAGCCCTAACTTTTAATTTAACTTTTTTCACCCAAATTTCTCTTCTCCTCCAATCTTTCGTCTGTCGCGCGGTAAGCTTGTTCGACATCGTCTCCTCCATCTGTGTGGTGTTCATCGTCACTTGCAAGCCGCCTCCGCCTCTTCTGTCTGTGTGTCGTTTCGTCGTTGCTCGTGTTCATCGTCGCTCGTTGCTCGTGGTTTCGCGTTCTGTTCGTGGTCGCTCGCAAGCAGCCGCCGCCTCTTACGTATGCACAGGTTCGTCCGCCGCCGCCGTTCAGAAACCACCTTTTTCGTCTGCACAAGTTAAATTACTTCATACTTCCGTCGTTCAGAGCCACCGCGCGTTCTACAGGCATGCTTTGTTAGCCAGAAATTGGGGAACTAGCAAAATTTTGTGGAGCAACAGTGACACAGTAGCTGCAAAAAAGGATGGTGTTGACTCAGAAGATCTTAATATTGACATGGACTCTTTTGGTAGCATGCTTGCTTTTAATGGATTATAA

Protein sequence

PLALTFNLTFFTQISLLLQSFVCRAVSLFDIVSSICVVFIVTCKPPPPLLSVCRFVVARVHRRSLLVVSRSVRGRSQAAAASYVCTGSSAAAVQKPPFSSAQVKLLHTSVVQSHRAFYRHALLARNWGTSKILWSNSDTVAAKKDGVDSEDLNIDMDSFGSMLAFNGL

Homology

[Close]

BLAST of MELO3C030434 vs. NCBI nr
Match: TYK09604.1 (uncharacterized protein E5676_scaffold458G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-55
Identity = 118/132 (89.39%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 37  VVFIVTCKPPPPLLSVCRFVVARVHRRSLLVVSRSVRGRSQAAAASYVCTGSSAAAVQKP 96
           +VFIVTCKPPP LLS C FVVARVHRRSLLVVSRSVRGRSQAAAAS VCTGSSAAA+QK 
Sbjct: 1   MVFIVTCKPPPALLSACHFVVARVHRRSLLVVSRSVRGRSQAAAASSVCTGSSAAAIQKL 60

Query: 97  PFSSAQVKLLHTSVVQSHRAFYRHALLARNWGTSKILWSNSDTVAAKKDGVDSEDLNIDM 156
           P  SAQVKLLH S VQ HRAFYRHALLARNWGTSKILWS+SDTVAAKKDGVDSEDLNIDM
Sbjct: 61  PLPSAQVKLLHNSAVQCHRAFYRHALLARNWGTSKILWSSSDTVAAKKDGVDSEDLNIDM 120

Query: 157 DSFGSMLAFNGL 169
           DSFGS+LAFNGL
Sbjct: 121 DSFGSLLAFNGL 132

[Close]

BLAST of MELO3C030434 vs. NCBI nr
Match: XP_016901852.1 (PREDICTED: uncharacterized protein LOC103495978 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-30
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 37  VVFIVTCKPPPPLLSVCRFVVARVHRRSLLVVSRSVRGRSQAAAASYVCTGSSAAAVQKP 96
           +VFIVTCKPPP LLS C FVVARVHRRSLLVVSRSVRGRSQAAAAS VCTGSSAAA+QK 
Sbjct: 1   MVFIVTCKPPPALLSACHFVVARVHRRSLLVVSRSVRGRSQAAAASSVCTGSSAAAIQKL 60

Query: 97  PFSSAQVKLLHTSVVQSHRAFYRHALLARNWGTSKILWSNSDTVAAKKDGVDSEDLNIDM 156
           P  SAQ                             ILWS+SDTVAAKKDGVDSEDLNIDM
Sbjct: 61  PLPSAQ-----------------------------ILWSSSDTVAAKKDGVDSEDLNIDM 104

Query: 157 DSF---GSMLAFN 167
           DSF   G+   FN
Sbjct: 121 DSFDLGGNTSMFN 104

[Close]

BLAST of MELO3C030434 vs. NCBI nr
Match: XP_016903446.1 (PREDICTED: uncharacterized protein LOC103503375 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 56  VVARVHRRSLLVVSRSVRG-----------------RSQAAAASYVCTGSSAAAVQKPPF 113
           +VARVHRRSLLVV+RSVRG                 RSQAAAAS VC GSSAAAVQKPP 
Sbjct: 1   MVARVHRRSLLVVARSVRGRSQAVVARSVPSAHVRCRSQAAAASSVCAGSSAAAVQKPPL 60

[Close]

BLAST of MELO3C030434 vs. NCBI nr
Match: KAA0066637.1 (uncharacterized protein E6C27_scaffold979G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 56  VVARVHRRSLLVVSRSVRG-----------------RSQAAAASYVCTGSSAAAVQKPPF 113
           +VARVHRRSLLVV+RSVRG                 RSQAAAAS VC GSSAAAVQKPP 
Sbjct: 1   MVARVHRRSLLVVARSVRGRSQAVVARSVPSAHVRCRSQAAAASSVCAGSSAAAVQKPPL 60

[Close]

BLAST of MELO3C030434 vs. NCBI nr
Match: KAA0067097.1 (uncharacterized protein E6C27_scaffold38G001540 [Cucumis melo var. makuwa] >TYK26332.1 uncharacterized protein E5676_scaffold14G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-09
Identity = 54/94 (57.45%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 24  RAVSLFDIVSSICVVFIVTCKPPPPLLSVCRFVVAR------------VHRRSLLVVSRS 83
           ++ +LFDIVSS+CVVFIV  K   PLLS CRFVVAR            VH RS   V+RS
Sbjct: 6   KSPNLFDIVSSVCVVFIVARKSSSPLLSACRFVVARGCSCSLSLVVHSVHGRSQAAVARS 65

Query: 84  -----VRGRSQ-AAAASYVCTGSSAAAVQKPPFS 100
                VR RSQ AAAAS VC GSSAA VQKP  S
Sbjct: 66  VLSAQVRDRSQAAAAASSVCAGSSAAGVQKPLLS 99

[Close]

BLAST of MELO3C030434 vs. ExPASy TrEMBL
Match: A0A5D3CEH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00370 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.4e-55
Identity = 118/132 (89.39%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 37  VVFIVTCKPPPPLLSVCRFVVARVHRRSLLVVSRSVRGRSQAAAASYVCTGSSAAAVQKP 96
           +VFIVTCKPPP LLS C FVVARVHRRSLLVVSRSVRGRSQAAAAS VCTGSSAAA+QK 
Sbjct: 1   MVFIVTCKPPPALLSACHFVVARVHRRSLLVVSRSVRGRSQAAAASSVCTGSSAAAIQKL 60

Query: 97  PFSSAQVKLLHTSVVQSHRAFYRHALLARNWGTSKILWSNSDTVAAKKDGVDSEDLNIDM 156
           P  SAQVKLLH S VQ HRAFYRHALLARNWGTSKILWS+SDTVAAKKDGVDSEDLNIDM
Sbjct: 61  PLPSAQVKLLHNSAVQCHRAFYRHALLARNWGTSKILWSSSDTVAAKKDGVDSEDLNIDM 120

Query: 157 DSFGSMLAFNGL 169
           DSFGS+LAFNGL
Sbjct: 121 DSFGSLLAFNGL 132

[Close]

BLAST of MELO3C030434 vs. ExPASy TrEMBL
Match: A0A1S4E0T4 (uncharacterized protein LOC103495978 OS=Cucumis melo OX=3656 GN=LOC103495978 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.6e-30
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 37  VVFIVTCKPPPPLLSVCRFVVARVHRRSLLVVSRSVRGRSQAAAASYVCTGSSAAAVQKP 96
           +VFIVTCKPPP LLS C FVVARVHRRSLLVVSRSVRGRSQAAAAS VCTGSSAAA+QK 
Sbjct: 1   MVFIVTCKPPPALLSACHFVVARVHRRSLLVVSRSVRGRSQAAAASSVCTGSSAAAIQKL 60

Query: 97  PFSSAQVKLLHTSVVQSHRAFYRHALLARNWGTSKILWSNSDTVAAKKDGVDSEDLNIDM 156
           P  SAQ                             ILWS+SDTVAAKKDGVDSEDLNIDM
Sbjct: 61  PLPSAQ-----------------------------ILWSSSDTVAAKKDGVDSEDLNIDM 104

Query: 157 DSF---GSMLAFN 167
           DSF   G+   FN
Sbjct: 121 DSFDLGGNTSMFN 104

[Close]

BLAST of MELO3C030434 vs. ExPASy TrEMBL
Match: A0A5A7VHQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00580 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 56  VVARVHRRSLLVVSRSVRG-----------------RSQAAAASYVCTGSSAAAVQKPPF 113
           +VARVHRRSLLVV+RSVRG                 RSQAAAAS VC GSSAAAVQKPP 
Sbjct: 1   MVARVHRRSLLVVARSVRGRSQAVVARSVPSAHVRCRSQAAAASSVCAGSSAAAVQKPPL 60

[Close]

BLAST of MELO3C030434 vs. ExPASy TrEMBL
Match: A0A1S4E5D3 (uncharacterized protein LOC103503375 OS=Cucumis melo OX=3656 GN=LOC103503375 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 56  VVARVHRRSLLVVSRSVRG-----------------RSQAAAASYVCTGSSAAAVQKPPF 113
           +VARVHRRSLLVV+RSVRG                 RSQAAAAS VC GSSAAAVQKPP 
Sbjct: 1   MVARVHRRSLLVVARSVRGRSQAVVARSVPSAHVRCRSQAAAASSVCAGSSAAAVQKPPL 60

[Close]

BLAST of MELO3C030434 vs. ExPASy TrEMBL
Match: A0A5D3DS95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001170 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 54/94 (57.45%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 24  RAVSLFDIVSSICVVFIVTCKPPPPLLSVCRFVVAR------------VHRRSLLVVSRS 83
           ++ +LFDIVSS+CVVFIV  K   PLLS CRFVVAR            VH RS   V+RS
Sbjct: 6   KSPNLFDIVSSVCVVFIVARKSSSPLLSACRFVVARGCSCSLSLVVHSVHGRSQAAVARS 65

Query: 84  -----VRGRSQ-AAAASYVCTGSSAAAVQKPPFS 100
                VR RSQ AAAAS VC GSSAA VQKP  S
Sbjct: 66  VLSAQVRDRSQAAAAASSVCAGSSAAGVQKPLLS 99

The following BLAST results are available for this feature:

BLAST of MELO3C030434 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09604.1	5.0e-55	89.39	uncharacterized protein E5676_scaffold458G00370 [Cucumis melo var. makuwa]	[more]
XP_016901852.1	9.6e-30	65.41	PREDICTED: uncharacterized protein LOC103495978 [Cucumis melo]	[more]
XP_016903446.1	1.3e-10	67.57	PREDICTED: uncharacterized protein LOC103503375 [Cucumis melo]	[more]
KAA0066637.1	1.3e-10	67.57	uncharacterized protein E6C27_scaffold979G00580 [Cucumis melo var. makuwa]	[more]
KAA0067097.1	4.2e-09	57.45	uncharacterized protein E6C27_scaffold38G001540 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of MELO3C030434 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEH7	2.4e-55	89.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E0T4	4.6e-30	65.41	uncharacterized protein LOC103495978 OS=Cucumis melo OX=3656 GN=LOC103495978 PE=...	[more]
A0A5A7VHQ5	6.3e-11	67.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E5D3	6.3e-11	67.57	uncharacterized protein LOC103503375 OS=Cucumis melo OX=3656 GN=LOC103503375 PE=...	[more]
A0A5D3DS95	2.0e-09	57.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C030434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030434.1	MELO3C030434.1	mRNA