MELO3C029759.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029759.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr02: 23678757 .. 23681875 (+)
RNA-Seq ExpressionMELO3C029759.jh1
SyntenyMELO3C029759.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGACATGCAGCGTTGCTTACCACAGCCGATGCATTCCTCATCACCGTCATGAAGAATTCGGTAGCTACGTTTGGATTCATTGTTGACCCAAGTGATCTCGAGTTCAGGCAGTTGAGGATGGTTTGTAGTTGTGGTTGTAAGGATGGCAGAGGAGCAAGATGGATTCGTGGAACGATGTCGTATCTTGTGACGAAGTGCACAAAATGGGTGGACCATTTCTCCCTTTTGAGAGCATGGGAGAAAATGAAGTTACCAACAAGGGGAGATCCAAATGTGATACATGTAGGAGTGAAGTTGGTGTATGGGTTTGAGTCTGGGTTTCTTTGCTGTTCCAACAGCCAGATGGTTGCAAGAATGGCTATCGGACCTCCGGCTGAGTGGCCGGTAAACACCACAGACTTATTCACTCTTAGCACCTGAGAAACGAAATCCCTCGTTAGTTTAAGAGAAGTGATAGAGGGTTTTGTTGGAAGCCTGGATTTATTATAAGTGAATGACAATAATGAGAAATAATTGCACAAGGAAATAATGCAATTTCTAAATATGGAGTACGATACAGATACAGAATCATGTTTGGTAAAGTTATTTTGTCGAAATCATAGCATTGCAAGAATGTTGATGCAAAATTTTATTCAATTTTTGTTTTCATACCTTCAAATATCTAATTTTAGTCCTATATTTTTCAAGAAACTTATTTATTGTTGATTTTAAATAGAACTACTTGTTATTTATTCTCTTTTCAAAGGAGATTTTCAAATGGAAAATATAGTAAAATTTTAGATTTTATCAATAATAGACTACTAGTATATCAATGGACATTGATGAAAGTCTAAGTTTAATTTGTGTCTATATTTTGTAAATATTTATAAGTAGTTTTATTATTTATGATATATTTTTTTTTTACTCTAGATTTTGAAAATATATTTATATGTTATGTTTTCTCACGAGATTATTAATCAACCTAGAAAAAAAAAACTCTTTTATTGCAATTTACAATACTCGAATATTAATATGTACTCGACACCCCAAAACTTGACTATTCTTTTGTCCATATTATTTAAAATTTTGAACTCATAAACTTACCCCATCTAAATTTTAGTGAATCGATTATATTTTAGAAATAAAATCTCTTTAGAAATAAAATGTCATAAAAAGAGGTTAAACAATTTAAAATATTATATCGGAGAAACTTCGATTTATCTTCTTAAACTTTTAAAATTCTAAACTAACATTATGGACTGATTTGCCTTAGTGAATCAAATTAAGAGCATTTATTAAGTTTGCATTTGAAAATTACCATTACTCCAACTGAAATAAGAAAAAAAAAACTTTGGAAAATTATTAAATAAGAAAAATTGATACTGAAAATATATAATTAGATTAGCCAAAATTTCTTAAAGAAAGTAAACAAATAAAGAACTTAAGAAACCAAATGTGAATAACTAAATCAGTAGACACATAAAAAGTACCAAATTAGGGCGAAATTAGGGCGAAATTAGGGCAAATAACAGTAATGATACCTCCTTAAGCTTCCCGAAAATTCCCTGGAATCGGCGAAGAAATGCGGAATTGACGACGGCATAATCATCGACGCCGATGCTCCTGACGGACGGAAACAGCTGAGTATCGATTTTGGTTACTCCGAAAGACGAATCGGAAGCAGAGAACCAGGCTTCCGGTGACGAAGATCCGGCGAAGCTAATGATGGAGGAATCTCTAGTTTTATCAAGAAGAAATGGCTTCTCAGGATGCTTGTGAGCTTTAATGGCGGCAGACCAAGCGCTTGCGATGAGATCTTCCTTCAAATTAATGGCGCCTTCAAGCTTCAGGTGAGCCATTTTTCCTTAGCTCCGATTATGCTTCTCTGCTTTTGGCTCTGAGTCTTCGTCTTCGTCTTCTTAATTTATGATACGAAAGATAATATATTAAGGAATTGTTAATCACTGGCTGTCGTTTTTCCGCTTGGAAAAGTAGTTTTGGATTGGGCAGTGCTTTTCCAAGAAATTTAATATAAGTGGTCTGTCGAGGAATCAAAGTTTCAATATCTATGAACTTTCCAACTTTGTTTGTTTCTTTCACTTTCACATGTGAGAGTTTGGGAACTACTTGTCCTAAAATAATATTTCTTTTCTTATCCAATAAGTCTTTGTTTTCTTTTTTTCTTTCGCAAATATTTATACTATTAAAGTGTGAATATGAATTCTCGATCAATTCAAATAAACTTTGAACCTTTGTAAAACCTAATAGAGGGTTTAAGTTTATGCACTTGTAAAAGTATATAGTCTAAATTGACATAATTAATGATTTGAGGTTTGAATTGATACCACTTTCAAAGTTTAGAGTTTAGCTTAGGTAATAAATATTTCTCTTTTCTTTACATCTCGGTTTACTTTTTATTTGGTCCATATTTTCCAAAATATTAAATATCTAAGTCTTTTATTTTGAATTTGTTTTTTAATTTAATCCTTAGACTTCATGACCGTTGTTTTATTATGGTCTTTTTAAGTTTTAAATCTAATTTTTATTTAGTTTATAAGTTTCTGAATGTTTCCTTTGTTTTAGTTTGGTTAAAATTTAGTACTTATGTTTTTAAAATATTACAATTCTATTAATAAAATTTGACTTCATAAAATTGTATCATTAATTAATGACTAAAGATGTAATTTTTTGAAATTTATAAATCAAATGTAATGTGGACTTAAAACTTACGATAAGTGTAATTTTGTATTCTACCCTTTTCCAATACACTCATATAATATAGTGCTAAAATGAGCTTAATTAAGATGTTAATTTGAGGGTCTTATTAAAATTGTAGTATACAAAAAGTTGGGTGAATGAGATAACAACGTAGACCAAATCATTCCATTAAACATTTCTAAAAACTAACCTACAATAGAAATCGAAAATTTCATATTCATCATAAGCATCGGCTCTATAAGTTTTCTCATACGGCAAGATTTCTCGCCAGAATCCCTTCAAATGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAGTCTTCCTACCATCCATCTTCATTTTCAAGCTTTCTTCCATCATGTATTCCAGTACGTACACGATCGTGTTACTACTCGCATTTCCATAG

mRNA sequence

ATGAGACGACATGCAGCGTTGCTTACCACAGCCGATGCATTCCTCATCACCGTCATGAAGAATTCGGTAGCTACGTTTGGATTCATTGTTGACCCAAGTGATCTCGAGTTCAGGCAGTTGAGGATGGTTTGTAGTTGTGGTTGTAAGGATGGCAGAGGAGCAAGATGGATTCGTGGAACGATGTCGTATCTTGTGACGAAGTGCACAAAATGGGTGGACCATTTCTCCCTTTTGAGAGCATGGGAGAAAATGAAGTTACCAACAAGGGGAGATCCAAATGTGATACATGTAGGAGTGAAGTTGGTGTATGGGTTTGAGTCTGGGTTTCTTTGCTGTTCCAACAGCCAGATGGTTGCAAGAATGGCTATCGGACCTCCGGCTGAGTGGCCGCTTCCCGAAAATTCCCTGGAATCGGCGAAGAAATGCGGAATTGACGACGGCATAATCATCGACGCCGATGCTCCTGACGGACGGAAACAGCTGAGTATCGATTTTGGTTACTCCGAAAGACGAATCGGAAGCAGAGAACCAGGCTTCCGGTGACGAAGATCCGGCGAAGCTAATGATGGAGGAATCTCTAGTTTTATCAAGAAGAAATGGCTTCTCAGGATGCTTGTGAGCTTTAATGGCGGCAGACCAAGCGCTTGCGATGAGATCTTCCTTCAAATTAATGGCGCCTTCAAGCTTCAGTTTTCTCATACGGCAAGATTTCTCGCCAGAATCCCTTCAAATGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAGTCTTCCTACCATCCATCTTCATTTTCAAGCTTTCTTCCATCATGTATTCCAGTACGTACACGATCGTGTTACTACTCGCATTTCCATAG

Coding sequence (CDS)

ATGAGACGACATGCAGCGTTGCTTACCACAGCCGATGCATTCCTCATCACCGTCATGAAGAATTCGGTAGCTACGTTTGGATTCATTGTTGACCCAAGTGATCTCGAGTTCAGGCAGTTGAGGATGGTTTGTAGTTGTGGTTGTAAGGATGGCAGAGGAGCAAGATGGATTCGTGGAACGATGTCGTATCTTGTGACGAAGTGCACAAAATGGGTGGACCATTTCTCCCTTTTGAGAGCATGGGAGAAAATGAAGTTACCAACAAGGGGAGATCCAAATGTGATACATGTAGGAGTGAAGTTGGTGTATGGGTTTGAGTCTGGGTTTCTTTGCTGTTCCAACAGCCAGATGGTTGCAAGAATGGCTATCGGACCTCCGGCTGAGTGGCCGCTTCCCGAAAATTCCCTGGAATCGGCGAAGAAATGCGGAATTGACGACGGCATAATCATCGACGCCGATGCTCCTGACGGACGGAAACAGCTGAGTATCGATTTTGGTTACTCCGAAAGACGAATCGGAAGCAGAGAACCAGGCTTCCGGTGA

Protein sequence

MRRHAALLTTADAFLITVMKNSVATFGFIVDPSDLEFRQLRMVCSCGCKDGRGARWIRGTMSYLVTKCTKWVDHFSLLRAWEKMKLPTRGDPNVIHVGVKLVYGFESGFLCCSNSQMVARMAIGPPAEWPLPENSLESAKKCGIDDGIIIDADAPDGRKQLSIDFGYSERRIGSREPGFR
Homology
[Close]
BLAST of MELO3C029759.jh1 vs. NCBI nr
Match: ERM98960.1 (hypothetical protein AMTR_s00226p00007010 [Amborella trichopoda])

HSP 1 Score: 73.2 bits (178), Expect = 5.35e-13
Identity = 41/82 (50.00%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 50  DGRGARWIRGTMSYLVTKCTKWVDHFSLLRAWEKMKLPTRGDPNVIHVGV-KLVYGFESG 109
           D +G + IRGT SYL TK  K  D FSL  AW +   PT GDP V+H GV +LV GF+  
Sbjct: 2   DEKGEKRIRGTTSYLDTKLMKCEDQFSLQIAWTRRWSPTNGDPKVMHRGVVRLVPGFQDW 61

Query: 110 FLCCSNSQMVARMAIGPPAEWP 130
                 S  VA +AI PP EWP
Sbjct: 62  L----RSHRVAMIAIDPPIEWP 79

[Close]
BLAST of MELO3C029759.jh1 vs. ExPASy TrEMBL
Match: W1NUL5 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00226p00007010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.59e-13
Identity = 41/82 (50.00%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 50  DGRGARWIRGTMSYLVTKCTKWVDHFSLLRAWEKMKLPTRGDPNVIHVGV-KLVYGFESG 109
           D +G + IRGT SYL TK  K  D FSL  AW +   PT GDP V+H GV +LV GF+  
Sbjct: 2   DEKGEKRIRGTTSYLDTKLMKCEDQFSLQIAWTRRWSPTNGDPKVMHRGVVRLVPGFQDW 61

Query: 110 FLCCSNSQMVARMAIGPPAEWP 130
                 S  VA +AI PP EWP
Sbjct: 62  L----RSHRVAMIAIDPPIEWP 79

The following BLAST results are available for this feature:
BLAST of MELO3C029759.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
ERM98960.15.35e-1350.00hypothetical protein AMTR_s00226p00007010 [Amborella trichopoda][more]
BLAST of MELO3C029759.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029759.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W1NUL52.59e-1350.00Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00226p00007010... [more]
BLAST of MELO3C029759.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029759.jh1.t1MELO3C029759.jh1.t1mRNA