MELO3C029638 (gene) Melon (DHL92) v4

Overview
NameMELO3C029638
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPHD finger alfin-like protein
Locationchr02: 16193443 .. 16195501 (+)
RNA-Seq ExpressionMELO3C029638
SyntenyMELO3C029638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGAAACAAAGAGATATCCCCTTTAGGAGCTGCTGCTGCCACCGTTACCGGGCGAGCCATTACCGATGATGCTAAAATGAAAATGCAGAAAAGGAGTGCAAGTGGTAACTTGGTGAATGATGCTGCCATTATTCTTAGAAAAACTGAGTACGAAGGTCTGTTGAAGGATAAAGGAATAGCTCTATTTTGTTTGTGGGAAAAAACGAGATAGTAGAGGTTAGATATATATAGATGGTCACACATGAAGATTGGAAACGTCTGGCAGCCATTGAAAACTGCAATTCTTTTAATATTAACTTTGAACTTTGGAGTTACTAAATTTGGGTTTAACGTGGAATGAGAATAGAAGATCATAATGCATTGTTGTAAGTTTTTTTTAGTCTTATTACTTGTTATTATTATTAATATTTGGTTAACTTGTCCCAACATTGAACAACTCAATTAGTTTCTACATATAAATCCTTGATTAAAATGTCTTACACTATGATATATACCATGTGTTTTTATGTCAACATCAAAGGATTCGGGGCACAATGGTGGTGCCTATCTAACATCCTAATTTCATATTAGAAAATTATATGTATTTTGGATCCAGACGTGTTAGGTTCATTAAAAAAAACAAAAAAAAAAAAAAAAAAAAACGTAACCATGTGTTTATGTCAATTTCTTGGATACTAATATTTGACAATAGAATATCAATAGATTTTAATATTAAAAAGTTGTCTTTTTTTTTTTTTTTAATAATAATCTTTATTTTTCTTTGACGATATACTAAAAGAACATTTATTCTTCATTTATATTGCATTAATGTTAAGGGTCTGCTAATATATATATATATATATATATATATTGACTAAAAAGAATTAGTTGTTAAAAATAAAATTTAAAAAATGCAGTGAATTGAATATTGAGCCCTTTCGTAAATGTTCACCTAGGGAAAATATCATTTGACAAGTCTCGGACATACAAAATATAAACCATCCAGTTTAATTATTTGTAAAATAATTACATACGCCAGCCTGTTAGAGGTGGGAGGTCCAAATTTTTGATCCTTGACTCGAAAAACTTTAATTATTTTAGTTTTTTTTTAAGGGAAAACTACTGCAAAACTGTACTTACATGATTCAAAAACAATGTCCTTTCTTTTCGTGATTTTTCTTTTTGGTCATTTAACTCCTTGGGTTACTATAGTTTTACTATTTTATTCTAAGATTTTTGCTATGTGTAAGTGATTTAGGCGTTTTTCAATTAGTCCTAAGCCGTCGTAGAGATCAACTTTCTATTGAGAATTAAGTTTTTATGTCGTGGAGTTTCCGCAGAAACCAATAAGGATTTTTTTATTTGCTTATAGTTCTTGCATTGAATATGGTGTGGTTGTCTCATAGAAAAAAATCAATAAAAAAAAGATTGATGTCTTATGCCCCTAAGTTTTTGATTATTTTTTTGTTCTTGTTGTTGCTATTTTAATGTTGGTTTTTGTTCTTGTTAGGAGTATCGGTTTTGGTTTTTTATCTGAACTTAAGTAAATTGGATTTGGTTATTAAGTTTCTGGTTTTTTACTATAATTTTATGCTCTATTCATTTAAGTTTCTTATGAATCTTAGTCCCCCTAATGTTTTTAATACTTTTTTGTTCTTGTTGTTGCTCTTTTAATATTCCGCTTATGGCTTCTGGTTCCTTATCCGAACTTAAGTAATTTGGATTTGGTTTATATATAGCACTTCTAATAAACACTATAAAAGTAGGAAAAAAAAAGCAGAAAAGAAAAAACGTAAAAGTGGGAAAAGATTATTTAAGTTTTGGTGCGATATTTGGATTTGATAAATCTGATAGGTATTTTGATTTTGACTTTAGTTCATGTAGGAGTTATTTCAATAACCATGATGGTTGATCTTGCTATAAAATGTTTTTCCATGTTCTTTTTATGCAGGAGGCGGCTATTTAATATTATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCAATATTGCAAAGAAACAAGTTAAGGAAAAATCATCAAGTGCAAATGGTAGCAAATCTAAGTCAAGTTTTAAAT

mRNA sequence

AGGGAAACAAAGAGATATCCCCTTTAGGAGCTGCTGCTGCCACCGTTACCGGGCGAGCCATTACCGATGATGCTAAAATGAAAATGCAGAAAAGGAGTGCAAGTGGTAACTTGGTGAATGATGCTGCCATTATTCTTAGAAAAACTGAGTACGAAGGGAAAACTACTGCAAAACTGAGGCGGCTATTTAATATTATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCAATATTGCAAAGAAACAAGTTAAGGAAAAATCATCAAGTGCAAATGGTAGCAAATCTAAGTCAAGTTTTAAAT

Coding sequence (CDS)

ATGAAAATGCAGAAAAGGAGTGCAAGTGGTAACTTGGTGAATGATGCTGCCATTATTCTTAGAAAAACTGAGTACGAAGGGAAAACTACTGCAAAACTGAGGCGGCTATTTAATATTATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCAATATTGCAAAGAAACAAGTTAAGGAAAAATCATCAAGTGCAAATGGTAGCAAATCTAAGTCAAGTTTTAAA

Protein sequence

MKMQKRSASGNLVNDAAIILRKTEYEGKTTAKLRRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK
Homology
[Close]
BLAST of MELO3C029638 vs. NCBI nr
Match: XP_008462331.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo] >KAA0059412.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa] >TYK03915.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSSSANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. NCBI nr
Match: KAA0067842.1 (PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 34 RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
          RRLFNIIND+PTVFEVVTNIAK+QVKEKSS+ANGSKSKSSFK
Sbjct: 28 RRLFNIINDMPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFK 69

[Close]
BLAST of MELO3C029638 vs. NCBI nr
Match: XP_008462330.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSSSANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. NCBI nr
Match: XP_004141692.1 (PHD finger protein ALFIN-LIKE 3 [Cucumis sativus] >KGN45504.1 hypothetical protein Csa_016627 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSS+ANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSTANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. NCBI nr
Match: XP_023548871.1 (PHD finger protein ALFIN-LIKE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 27  GKTTAKLRRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           G   A  RRLFN+INDLPTVFEVVT +AKKQVKEKSSSANGSKSKSS K
Sbjct: 114 GFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKSSSANGSKSKSSLK 162

[Close]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match: O81488 (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 27  GKTTAKLRRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGS--KSKSSFK 76
           G   A  +RLFN++NDLPT+FEVV   AKKQ K+KSS +N S  +SKSS K
Sbjct: 114 GFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK 164

[Close]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           +RLFN+IND+PT+FEVVT +AK + K  +++ NG+KSKS+ K
Sbjct: 122 KRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSK 163

[Close]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match: A2WXR5 (PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_04717 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+IN+LPT+FEVVT  AKKQ KEK+ +++   +K S K
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSK 180

[Close]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match: Q7F2Z1 (PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0887700 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+IN+LPT+FEVVT  AKKQ KEK+ +++   +K S K
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSK 180

[Close]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match: A2Y4R8 (PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19996 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.9e-05
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+IN+LPT+FEVVT  AKKQ KEK+ ++    +K S K
Sbjct: 123 RRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSK 164

[Close]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match: A0A5D3BXQ0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001120 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSSSANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match: A0A5A7VHJ0 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 34 RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
          RRLFNIIND+PTVFEVVTNIAK+QVKEKSS+ANGSKSKSSFK
Sbjct: 28 RRLFNIINDMPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFK 69

[Close]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match: A0A1S3CI87 (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSSSANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match: A0A1S3CGR0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSSSANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match: A0A0A0K9L1 (PHD-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           RRLFN+INDLPTVFEVVT IAKKQVKEKSS+ANGSKSKSSFK
Sbjct: 121 RRLFNMINDLPTVFEVVTGIAKKQVKEKSSTANGSKSKSSFK 162

[Close]
BLAST of MELO3C029638 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 27  GKTTAKLRRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGS--KSKSSFK 76
           G   A  +RLFN++NDLPT+FEVV   AKKQ K+KSS +N S  +SKSS K
Sbjct: 114 GFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK 164

[Close]
BLAST of MELO3C029638 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSSFK 76
           +RLFN+IND+PT+FEVVT +AK + K  +++ NG+KSKS+ K
Sbjct: 122 KRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSK 163

[Close]
BLAST of MELO3C029638 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 27  GKTTAKLRRLFNIINDLPTVFEVVTNIAKKQVKEKSSSA--NGSKSKSSFK 76
           G   A  +RLF++IN++PTV+EVVT  A+KQ KE  SSA  NG++SKS+ K
Sbjct: 115 GFDRADRKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSK 165

[Close]
BLAST of MELO3C029638 vs. TAIR 10
Match: AT1G14510.1 (alfin-like 7 )

HSP 1 Score: 44.3 bits (103), Expect = 5.1e-05
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 34  RRLFNIINDLPTVFEVVTNIAKKQVKEKSSSANGSKSKSS 74
           +RLF +INDLPT+FEVVT  A KQ K++S++ N S+SKSS
Sbjct: 121 KRLFQMINDLPTIFEVVTGNA-KQSKDQSANHNSSRSKSS 159

The following BLAST results are available for this feature:
BLAST of MELO3C029638 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462331.16.4e-1095.24PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo] >KAA00... [more]
KAA0067842.16.4e-1092.86PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa][more]
XP_008462330.16.4e-1095.24PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
XP_004141692.11.4e-0992.86PHD finger protein ALFIN-LIKE 3 [Cucumis sativus] >KGN45504.1 hypothetical prote... [more]
XP_023548871.13.2e-0981.63PHD finger protein ALFIN-LIKE 3-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C029638 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O814881.3e-0558.82PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2[more]
Q9M2B42.9e-0557.14PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1[more]
A2WXR52.9e-0559.52PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_04... [more]
Q7F2Z12.9e-0559.52PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
A2Y4R84.9e-0559.52PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19... [more]
BLAST of MELO3C029638 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BXQ03.1e-1095.24PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7VHJ03.1e-1092.86PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CI873.1e-1095.24PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CGR03.1e-1095.24PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0K9L16.9e-1092.86PHD-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE... [more]
BLAST of MELO3C029638 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G26210.19.2e-0758.82alfin-like 4 [more]
AT3G42790.12.1e-0657.14alfin-like 3 [more]
AT5G20510.11.3e-0554.90alfin-like 5 [more]
AT1G14510.15.1e-0562.50alfin-like 7 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029638.1MELO3C029638.1mRNA