MELO3C029155 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029155
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Sm-like protein LSM2
Location	chr01: 25256617 .. 25257681 (+)
RNA-Seq Expression	MELO3C029155
Synteny	MELO3C029155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTGCTGGTTATTTAGTATTGGTATAAACTCTTATTTCTCCATGATCAAGAACATCTGTTAAATCAATTATTTCACGATGATTTATCCAGCCTTCTTAAATTTACTTAGCCCCTCCCTACTTCCACCCACCCACCCATTTTGTAATCTGAACGTGTATTTATGTTTGCGTCGTTAGACTAATGGAGTTCAAGTTTTCTCTTTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTTGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGACGCCACTAGGCGCGAAGCTCGGGGTGGCTAATGTCACTTTGTTTGTAAGTTTGTATTGAATCACATGGAAATTATTAGAGTGCACTTTTTAGCATACTGCAATGTGAGACAATTAGAATCTTGTACATTCTGTTCAAGTGTTCTCGATCAAAGAATCCAATGAGATTCTTCTGTTCAGCGGGTAATAGTGAAACCAAGGGTTGGGGCCTTCACAATGACCAAAATGTTGTTATGCTTTTGGATTCACTTTTGAATTATTCACTTTCGAATAATTTCATAAACAAGTAGATGCTAGTAGAGATTAACTTAAAAAGAAGTCAACTAACATGTACTACCGATTTCTCGAAAGTCAAAAGTATAAAGATTAAGAAACTTGATAGAAGATTGACAAACATTGAATGAAGCTGGCTTTTTAACTAATTCTATTTAGCTAAGCATAGCTCTGAGTATTTGAGAGGCCAATGGCCTTGAAGTAAAAGTATTTTAACTAATTCTATTTAGCTAAACATAGCTTTGAGTATTTTGAGAGAGTGCAGTGGCCTCGAAGGGTAAGTACTTCAAGGTTGGGGACTTCCCTGGCCTCATTCTCACATGAACATTGGTGGGGTAGAGATCTCTTTGTCAAAGCCCTTAGGCTTTAGGTGGAGCATTGGTAACAAAAGGAAATTTTTTATTGACCAAGCTCCCTGGATAGAGAGGGAAGGGTTCTGATAGCACTTGAAATTATATATTTACTATTCAGGCCTCAGCCAAGAGAGTTCTAG

mRNA sequence

ATGTTGGTTGCTGGTTATTTAGTATTGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTTGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGACGCCACTAGGCGCGAAGCTCGGGCGGGTAATAGTGAAACCAAGGGTTGGGGCCTTCACAATGACCAAAATCTAAACATAGCTTTGAGTATTTTGAGAGAGTGCAGTGGCCTCGAAGGGCCTCAGCCAAGAGAGTTCTAG

Coding sequence (CDS)

ATGTTGGTTGCTGGTTATTTAGTATTGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTTGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAGCTGTTGCATGACGCCACTAGGCGCGAAGCTCGGGCGGGTAATAGTGAAACCAAGGGTTGGGGCCTTCACAATGACCAAAATCTAAACATAGCTTTGAGTATTTTGAGAGAGTGCAGTGGCCTCGAAGGGCCTCAGCCAAGAGAGTTCTAG

Protein sequence

MLVAGYLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAGNSETKGWGLHNDQNLNIALSILRECSGLEGPQPREF

Homology

[Close]

BLAST of MELO3C029155 vs. NCBI nr
Match: KAD3338226.1 (hypothetical protein E3N88_33747 [Mikania micrantha])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9   LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
           +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 455 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 494

[Close]

BLAST of MELO3C029155 vs. NCBI nr
Match: XP_022727482.1 (sm-like protein LSM2 isoform X2 [Durio zibethinus])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. NCBI nr
Match: XP_022040824.1 (sm-like protein LSM2 [Helianthus annuus] >KAF5820481.1 putative U6 snRNA-associated Sm-like protein LSm2 [Helianthus annuus])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. NCBI nr
Match: XP_022727481.1 (sm-like protein LSM2 isoform X1 [Durio zibethinus])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9   LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
           +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 65  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 104

[Close]

BLAST of MELO3C029155 vs. NCBI nr
Match: XP_022758167.1 (sm-like protein LSM2 [Durio zibethinus])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-13
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          Y  +LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREAR G
Sbjct: 51 YPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 46
          Y  +LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 51 YPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 46
          Y  +LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 51 YPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAGNSETK 54
          Y  ++SV+NCFIRGSVVRYV LP + VD+E L D +R EAR    + K
Sbjct: 51 YPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAREQKKQNK 98

[Close]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 26/39 (66.67%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE 45
          Y  L SVRN FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 51 YPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of MELO3C029155 vs. ExPASy TrEMBL
Match: A0A5N6MCU2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_33747 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9   LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
           +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 455 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 494

[Close]

BLAST of MELO3C029155 vs. ExPASy TrEMBL
Match: A0A251VLF3 (Sm-like protein LSM2 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0002411 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. ExPASy TrEMBL
Match: A0A6P6A067 (Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111305170 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. ExPASy TrEMBL
Match: A0A6P5XI79 (Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111283288 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 54 MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MELO3C029155 vs. ExPASy TrEMBL
Match: A0A6P5XHY6 (Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111283288 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9   LLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
           +LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR G
Sbjct: 65  MLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG 104

[Close]

BLAST of MELO3C029155 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 6  YLVLLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARAG 49
          Y  +LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREAR G
Sbjct: 51 YPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

The following BLAST results are available for this feature:

BLAST of MELO3C029155 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD3338226.1	3.4e-12	95.00	hypothetical protein E3N88_33747 [Mikania micrantha]	[more]
XP_022727482.1	3.4e-12	95.00	sm-like protein LSM2 isoform X2 [Durio zibethinus]	[more]
XP_022040824.1	3.4e-12	95.00	sm-like protein LSM2 [Helianthus annuus] >KAF5820481.1 putative U6 snRNA-associa...	[more]
XP_022727481.1	3.4e-12	95.00	sm-like protein LSM2 isoform X1 [Durio zibethinus]	[more]
XP_022758167.1	3.4e-12	95.00	sm-like protein LSM2 [Durio zibethinus]	[more]

BLAST of MELO3C029155 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H595	5.5e-13	81.40	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
Q9Y333	1.1e-08	72.50	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
O35900	1.1e-08	72.50	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
Q54TF6	5.4e-08	56.25	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
P38203	1.6e-04	66.67	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MELO3C029155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6MCU2	1.7e-12	95.00	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_33747 PE=3 SV=1	[more]
A0A251VLF3	1.7e-12	95.00	Sm-like protein LSM2 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0002411 PE=3 ...	[more]
A0A6P6A067	1.7e-12	95.00	Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111305170 PE=3 SV=1	[more]
A0A6P5XI79	1.7e-12	95.00	Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111283288 PE=3 SV=1	[more]
A0A6P5XHY6	1.7e-12	95.00	Sm-like protein LSM2 OS=Durio zibethinus OX=66656 GN=LOC111283288 PE=3 SV=1	[more]

BLAST of MELO3C029155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03330.1	3.9e-14	81.40	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 4..50 e-value: 3.9E-8 score: 34.4
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 6..46
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 13..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029155.1	MELO3C029155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing