MELO3C029143.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029143.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description1-deoxy-D-xylulose-5-phosphate synthase
Locationchr01: 24347743 .. 24352342 (-)
RNA-Seq ExpressionMELO3C029143.jh1
SyntenyMELO3C029143.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCTGTATGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGGATTGAGAGAGCATGATGGTTCAAGTGTTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGTTTTCTGATTTTAGAAAAGGGTTAATCAGGTATTGCTTAGAAAAATAAGATAGGGAATTATGCGCACCAAGTGTTTGATGAAAACCCAAGTGAGAAGAAAGGAATCTTTCCGATCTTTTTGCAATTGAAAATTGGAAATTGTGGCTTTTCTTCACCTTTTCAATTGACGTTTGTTCCGAGGAGAGTTACAACTAAAATGTTCATTTCACTTTTTAAAATTTTTTTGTTATCTTTGTTTGAATTTTGACCTTCTATTTTGATTATTTTAAATTCAGAAACAAAGATAAATAAATAAATTTGAAAGGCGTGGTTGTTGGCTTTTTGTTTCAAGGCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAAAGACGGGAGAGTATCCTTCGCAGAGGCCACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTACACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTATCTATCAAGGTGAAAAATAAAAAACCAAATCACAAATATCAAATCAAGCTTTCCACTTTCTTTGTAAATAACCAAAAAAAACTTCTTATCTTAACTTTTGACTTGAAACCCTTGAACTTTGTGATAGTTGAATAAAATGGTACTAAAGTAAAAAAATGAATTATGAAAGCTTCTGTGTTCAACCTACTGTATTCGTCTACCCCATTAATATGTACAATCACTTATGGTGTCTGGAACTAATTTTTTGAACTCTTGATCCGTTTGATACTCTTTGAAATGTTGATTTCTTGTCGGGGTATTGCTGATTTAGGAGCTTTATCAACTAGGTGATGAAGTAAGATCCGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGAAGCTCTCGGTGGCTCTTCACTATGTCTTCAATGCTCCACAGGACAGAATTTTGTGGGATGTTGGTCATCAGGTGCTGTTCATCTTGCATTCTCTCTTGCTTGGGAAATATTTATATTTGACTTGGTGAGATAAGAGATGTCAATGGCCTTTTATTTTAATACGTTATAAAATGTGTGATGATTGTAGTCTTATCCACACGAAATTCTAACAGGAAGGAGGGACAAAATGTCAGTTTTCTTCTTAAAATTAAGTTATAAACTTACTTCCACCTTTCTTTTTTTGCAATTTCTGGCATAGATTTCTGTTAGTATGTTGAGAGGGAGGAACAAATTTTGATGCATCATGCATTAGTTCTTTTGTTATATCTTTATGAAGCAATTTTCTTGTAGGTTTTTTGAATCATTTTTAAGCTTTGAAGACCAAAGAATTCAGCATCTTCTTCATTTCCACAGTTTTTGCTACTGGAAATGAGGGGGTGAATAACCTTGGCTTTATTTGATTTATGGGAAATAAATGTCTTGAATTCATAATATATAGAAACTGATTTGGTAATTAGTTTGATTCTAATTCTTGAATGCTGCTTCTTTCTGTTCATTTTAAATATTCTAATGTTTGTTGCACCTCTAACTTCAATTGACGTAGAACGATATGGATCATAGTTGTCATCCAATGAACTCCATGAGTTTGATGCTCTCAAGGATGATTACGAGATCAATTGGCATTTAAAGCACCTTTAAGAAGATTGCATCTAATCGATGGTGTGAAAAGCAAACCAAGTAGTTCTCACTCCTTTTAATCCTAGGTAAGTTAAGTTAGTTTATCAGTTGCATTGACAATAAAATTGTACTTATATTAGGGGTCGTTGGACACTACTTACCATAAATGCGTATAAGGATACAATGTTTTGCCTTGACTTGCTAACGATGATATCCAAATCAACTACAAAATATGTAACCGACACGTAAGTTAACCTTCTATATCATGTAGTACTGTTAATTCTAATGCATGTACAATATTATGAAATATGTGCAATCTTATCTTAGCAAAACAGAGCAATAGCGATGTTTCACTCGCAAAATAATATTAATAAAAGCAGGAAACAAATTTATGGCAAACAGTAAAGACAAGTATAAATATTTAAATTCATTGTATTTTGTAGACTACTAGCAATTAGGATTAGTCCGTTATTCTAATTTGTTATTTTTATAGTGTCCACTACAAGTCGGGAGTATCAAGTGTGGATACTATGTCATGAAGTTTATGAGAGAAATTGTAAATAGGGGAACCATTGTCATATTAGATTCAGTATGTTATATATCAAACTATTTCTTTTGCGACTACAATAATTTTCATGAATTCATTTATTTTGCATGTTTACATTGATACATGAAACCATACACACATGTCGAGTTTAGATGAGGTGCGAGTTGAGTTGGCTGATTTTTTTGGATTCATACATATGATTGCGACTTATTTGTGATTCTGAAACAGGAAATTTATCTTTTTGTGGCTGATTTTTTGAATTGTTCATATGGAGAGGAGGATCGATTGGTATACTTTTGAGACTTTGTTGTGATATCCATTCTGAAACTTTGTTGATAGGTTAATTGTTCATAAGAGTTGAATTGTTGATAGGTGAATTGTTCATATGGAGGGTTGATAGGTGAATTGTTCTTAAGAGTTGAATTGTTTTGAAACTTTGCTGTGGTAGCCATCCTGAAACTTTGTTGCGGTTGCCATTCTGAAATTTTATGTATAAAGATGATATGTTTTTGGGTTAAGTTAGTTAATTAGAGGATGTTGAGTTGAATCCTTGGAAATTTGATGGAATTATTTATATTGATTTTGTAAATGATATGAATATTTGTAAAGTTTTGGAAATGATATGGTGAAGAGTTTTATATTTGATGAATAATCATTTATATATATTTATGGAATAATTGTTGGACTATTATACATGACCGATGTGAGCATAATACAGAAATAAAAATATAATTGAATTACAATTAAAAAAAATAGAAAAATGCTTGACGATTTTAAAATGGCAAACAATTGCATTCTTGATGGTTTTTAGAAGTCAAACAATCACTTTTTTTACGGTTATTAAATGTCATGAAAAAGCATACTCTTGATGGTTTTTGTCATGGATACTCATATTGTTGATAATTTTAAACTGTCATAAACATTTATACTTTTGACGGTTTTAAACTATCACGAAAATTAGTATATTTGATAGTTATAAATTGTCAACGTTCATTATTCTTCACGTTTTTACCAATCGTCAAGAACTTTGACTTTCTTGACAATTGCTTCAACGACGGTTTTAAAACCGTCAAGAATTTCGACAGTTTAAAACGGTCAAGAGAGTGTTTTTGTAGTAGTGTCAAAATTGTTCTATAAAGTGTAAATACTTTGTCAATTTGTTCTATTTTTGAAGACTCATTTTCTTTTTCTTTTTTTTTTAAACTCATTAAACATTTTCATCTAATAAAATAATCTATTCTAGTAAATTTTAAGCTAAGTACACATCATCATTTAACATCCCTGCAAATCCGTAAAAATAATAACTAACATTCAACCTTCGAGAACTAAAAATATCCATTATAAAGCCTCAAGGATCAAGTAAGAGACCTATTTGAAACAACACCGAACAAAAATGATTGTATCTCAATGATACAGATAGAAAAATGGTAAATAAAAACAAGATCAAATGGAAGCATAATAATGGTAAAGTACACAAACTCAAATATGGAAAGAAACTAAATAATGAATTGAATTTCGTGCAAATGAATATCATTTAAGGGGAATGGAGTTAACAAAGTCTCAATCACAAAAGAAATGGCTGTTTCCTTTGCCAACCGATCTTCATTGCTTTGCATGGTCTGTATTGCTTTCCTTGTCATTGCTGGTAATTCACACTCTCTTATCTGTTTAAAATGTTGAAAGAGGTTAGATTTTAGTTTCTATACATTCCACTTTAGTTTATTTTTGACTCATATATACTTTTAAGATGAATCATATTTATTTTTTAAATGTTCATTTTTGTGATGTACTTTTAACTTTAGTTCTCTTGTATTTTAAAAAAGTGATCACTCTAATTCATTTCATTTTCATTTTAGAATCAAAATGGTCACTTCTAAAAATGAACGTGCAAGAATCAAAATGTTCATTCATGATTATCACGATCTATTATTTGACAGAGCATGATATATAATCTTATAAATATTATTTTTATTATATTTTTCAAGTTCCTTACGTTAATCCCATCTAATAAGAAAAAAAAAGAAAAAAAAGAAAAAGGGTGATGTGCAAATCAAATATGAAATTTTAAAGAAGAACCAAAAACATTCTTGAGTGTAGCATAAACAATCAAAATGCAAGAAGAGTGAATGGAGATGATATTATATGAAATTGCAGGGACAGGACCGGAGAGAATATGTGGCCAAACGACGACTGGAGCATGTTTGGGAGTGTGCTCAGGTTTTCCAAATTGTAACCAAACTTGCCTCGACCAAGGTTACAAGGAGGGTGGTAAATGTTATTCTGATGGTCTTTGTTGTTGCAATAATTTCTAA

mRNA sequence

ATGGCGCTCTGTATGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGGATTGAGAGAGCATGATGGTTCAAGTGTTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAAAGACGGGAGAGTATCCTTCGCAGAGGCCACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTACACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTATCTATCAAGGAGCTTTATCAACTAGGTGATGAAGTAAGATCCGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGAAGCTCTCGGTGGCTCTTCACTATGTCTTCAATGCTCCACAGGACAGAATTTTGTGGGATGTTGGTCATCAGACCAAAGAATTCAGCATCTTCTTCATTTCCACAGTTTTTGCTACTGGAAATGAGGGGTGTCCACTACAAGTCGGGAGTATCAAGTGTGGATACTATGTCATGAAGTTTATGAGAGAAATTGTAAATAGGGGAACCATTGTCATATTAGATTCAGTATGGACAGGACCGGAGAGAATATGTGGCCAAACGACGACTGGAGCATGTTTGGGAGTGTGCTCAGGTTTTCCAAATTGTAACCAAACTTGCCTCGACCAAGGTTACAAGGAGGGTGGTAAATGTTATTCTGATGGTCTTTGTTGTTGCAATAATTTCTAA

Coding sequence (CDS)

ATGGCGCTCTGTATGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGGATTGAGAGAGCATGATGGTTCAAGTGTTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAAAGACGGGAGAGTATCCTTCGCAGAGGCCACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTACACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTATCTATCAAGGAGCTTTATCAACTAGGTGATGAAGTAAGATCCGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGAAGCTCTCGGTGGCTCTTCACTATGTCTTCAATGCTCCACAGGACAGAATTTTGTGGGATGTTGGTCATCAGACCAAAGAATTCAGCATCTTCTTCATTTCCACAGTTTTTGCTACTGGAAATGAGGGGTGTCCACTACAAGTCGGGAGTATCAAGTGTGGATACTATGTCATGAAGTTTATGAGAGAAATTGTAAATAGGGGAACCATTGTCATATTAGATTCAGTATGGACAGGACCGGAGAGAATATGTGGCCAAACGACGACTGGAGCATGTTTGGGAGTGTGCTCAGGTTTTCCAAATTGTAACCAAACTTGCCTCGACCAAGGTTACAAGGAGGGTGGTAAATGTTATTCTGATGGTCTTTGTTGTTGCAATAATTTCTAA

Protein sequence

MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAEATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSIFFISTVFATGNEGCPLQVGSIKCGYYVMKFMREIVNRGTIVILDSVWTGPERICGQTTTGACLGVCSGFPNCNQTCLDQGYKEGGKCYSDGLCCCNNF
Homology
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BLAST of MELO3C029143.jh1 vs. NCBI nr
Match: XP_008458506.1 (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 214 bits (545), Expect = 8.86e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

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BLAST of MELO3C029143.jh1 vs. NCBI nr
Match: XP_004144970.1 (probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucumis sativus] >KGN46181.1 hypothetical protein Csa_005071 [Cucumis sativus])

HSP 1 Score: 214 bits (545), Expect = 8.86e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

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BLAST of MELO3C029143.jh1 vs. NCBI nr
Match: KAA0033450.1 (putative 1-deoxy-D-xylulose-5-phosphate synthase [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (545), Expect = 9.52e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

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BLAST of MELO3C029143.jh1 vs. NCBI nr
Match: KAG7026282.1 (putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 4.32e-56
Identity = 101/158 (63.92%), Postives = 115/158 (72.78%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MA C L FPA +SRV ++EH+G S AVSSRFLWG DL  + K R +  +  + G +  + 
Sbjct: 1   MAPCTLAFPASISRVAVKEHEGLS-AVSSRFLWGMDLDFRFKKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    F          +S PTPLLDTINYPIHMKNLSIKEL QL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEFP--------SQSPPTPLLDTINYPIHMKNLSIKELNQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEF 158
           GHLGSSLGVV+L+VALHYVFN PQDRILWDVGHQ   F
Sbjct: 121 GHLGSSLGVVELTVALHYVFNTPQDRILWDVGHQVLFF 148

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BLAST of MELO3C029143.jh1 vs. NCBI nr
Match: AEM42997.1 (1-deoxyxylulose-5-phosphate synthase [Siraitia grosvenorii])

HSP 1 Score: 201 bits (510), Expect = 9.55e-56
Identity = 110/164 (67.07%), Postives = 123/164 (75.00%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQ-EKARWDLCITFKDGRVSFA 60
           MALC LTFPAHVSRV  +EH+GSS AVSSRFLWGTDL  + +K      ++ + G +   
Sbjct: 1   MALCTLTFPAHVSRVAAKEHEGSS-AVSSRFLWGTDLLFRFQKKLNQRQVSKRPGGI--- 60

Query: 61  EATNSSFGYNKLSNSYE---KSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNV 120
                   Y  LS + E   +  PTPLLDTINYPIHMKNLSIKELYQL DEVRSDVIFNV
Sbjct: 61  --------YASLSETGEYPSQRPPTPLLDTINYPIHMKNLSIKELYQLADEVRSDVIFNV 120

Query: 121 SKTGGHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           SKTGGHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 SKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 152

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BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match: O78328 (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=TKT2 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37
Identity = 87/156 (55.77%), Postives = 104/156 (66.67%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSS-VAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFA 60
           MALC   FP  ++R      D S    + S ++ GTDL  Q   +    +T    R    
Sbjct: 1   MALCAYAFPGILNRTVAVASDASKPTPLFSEWIHGTDLQFQFHQK----LTQVKKRSRTV 60

Query: 61  EATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKT 120
           +A+ S  G       Y +  PTP++DTINYPIHMKNLS+KEL QL DE+RSD IFNVSKT
Sbjct: 61  QASLSESG-----EYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKT 120

Query: 121 GGHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQT 156
           GGHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+
Sbjct: 121 GGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQS 147

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BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match: Q38854 (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DXS PE=1 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-34
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 75  YEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSLGVVKLSV 134
           Y    PTPLLDTINYPIHMKNLS+KEL QL DE+RSDVIFNVSKTGGHLGSSLGVV+L+V
Sbjct: 68  YSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTV 127

Query: 135 ALHYVFNAPQDRILWDVGHQT 156
           ALHY+FN PQD+ILWDVGHQ+
Sbjct: 128 ALHYIFNTPQDKILWDVGHQS 148

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BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match: O22567 (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLA1 PE=2 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-33
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 75  YEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSLGVVKLSV 134
           + +  PTPLLDT+NYPIHMKNLS+KEL QL DE+RSDVIF+VSKTGGHLGSSLGVV+L+V
Sbjct: 64  HSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTV 123

Query: 135 ALHYVFNAPQDRILWDVGHQT 156
           ALHYVFN PQD+ILWDVGHQ+
Sbjct: 124 ALHYVFNTPQDKILWDVGHQS 144

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BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match: Q6YU51 (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190000 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 53  DGRVSFAEATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDV 112
           DG+V   +   S  G  K+  S EK   TPLLDT+NYP+HMKNLS  EL QL  E+R+++
Sbjct: 43  DGKVMMRKEAAS--GAWKIDYSGEKPA-TPLLDTVNYPVHMKNLSTPELEQLAAELRAEI 102

Query: 113 IFNVSKTGGHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQ 155
           +  VSKTGGHL SSLGVV+L+VALH+VF+ P+D+I+WDVGHQ
Sbjct: 103 VHTVSKTGGHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQ 141

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BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match: Q5FUB1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=dxs PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 82  PLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSLGVVKLSVALHYVFN 141
           P LD + +P  M+NLS+ +L QL DE+RS+ +  VS TGGHLG+SLGVV+L+VALH VFN
Sbjct: 15  PELDRVRFPADMRNLSVDQLKQLADELRSETVDAVSTTGGHLGASLGVVELTVALHAVFN 74

Query: 142 APQDRILWDVGHQ 155
            P DRI+WDVGHQ
Sbjct: 75  TPDDRIIWDVGHQ 87

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BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KEI3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis sativus OX=3659 GN=Csa_6G067390 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.29e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

[Close]
BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C843 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis melo OX=3656 GN=LOC103497896 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.29e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

[Close]
BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SRA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001110 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.61e-61
Identity = 110/160 (68.75%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALCMLTFPAHVSRVGL+EHDGSSVAVSSRFLWGTDL  + + R +  +  + G +  + 
Sbjct: 1   MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQ-VKKRPGGICASL 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           +    +   +         PTPLLDTINYPIHMKNLS+KELYQL DEVRSDVIFNVSKTG
Sbjct: 61  SETGEYPSQR--------PPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 151

[Close]
BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match: K7NC02 (1-deoxy-D-xylulose-5-phosphate synthase OS=Siraitia grosvenorii OX=190515 GN=DXS PE=2 SV=1)

HSP 1 Score: 201 bits (510), Expect = 4.62e-56
Identity = 110/164 (67.07%), Postives = 123/164 (75.00%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQ-EKARWDLCITFKDGRVSFA 60
           MALC LTFPAHVSRV  +EH+GSS AVSSRFLWGTDL  + +K      ++ + G +   
Sbjct: 1   MALCTLTFPAHVSRVAAKEHEGSS-AVSSRFLWGTDLLFRFQKKLNQRQVSKRPGGI--- 60

Query: 61  EATNSSFGYNKLSNSYE---KSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNV 120
                   Y  LS + E   +  PTPLLDTINYPIHMKNLSIKELYQL DEVRSDVIFNV
Sbjct: 61  --------YASLSETGEYPSQRPPTPLLDTINYPIHMKNLSIKELYQLADEVRSDVIFNV 120

Query: 121 SKTGGHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQTKEFSI 160
           SKTGGHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ+    I
Sbjct: 121 SKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKI 152

[Close]
BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match: A0A2I0IW23 (TRANSKETOLASE_1 domain-containing protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_031617 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 5.03e-53
Identity = 96/154 (62.34%), Postives = 109/154 (70.78%), Query Frame = 0 

Query: 1   MALCMLTFPAHVSRVGLREHDGSSVAVSSRFLWGTDLAGQEKARWDLCITFKDGRVSFAE 60
           MALC  +FP  ++R    E    S ++SS FLWGTD+ GQ + +    ++    R     
Sbjct: 1   MALCAFSFPGQLNRSTAAECQRGSGSISSVFLWGTDVMGQTQQK----LSQMRKRPCGVY 60

Query: 61  ATNSSFGYNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTG 120
           A+ S  G       Y K  PTPLLDTINYPIHMKNLSIKEL QL DEVRSDVIFNVSKTG
Sbjct: 61  ASLSERG-----EYYAKRPPTPLLDTINYPIHMKNLSIKELKQLADEVRSDVIFNVSKTG 120

Query: 121 GHLGSSLGVVKLSVALHYVFNAPQDRILWDVGHQ 154
           GHLGSSLGVV+L+VALHYVFNAPQDRILWDVGHQ
Sbjct: 121 GHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQ 145

[Close]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match: AT4G15560.1 (Deoxyxylulose-5-phosphate synthase )

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-35
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 75  YEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSLGVVKLSV 134
           Y    PTPLLDTINYPIHMKNLS+KEL QL DE+RSDVIFNVSKTGGHLGSSLGVV+L+V
Sbjct: 68  YSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTV 127

Query: 135 ALHYVFNAPQDRILWDVGHQT 156
           ALHY+FN PQD+ILWDVGHQ+
Sbjct: 128 ALHYIFNTPQDKILWDVGHQS 148

[Close]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match: AT3G21500.2 (1-deoxy-D-xylulose 5-phosphate synthase 1 )

HSP 1 Score: 138.7 bits (348), Expect = 6.8e-33
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0 

Query: 68  YNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSL 127
           +++    Y    PTPLLDTIN+P+HMKNLSIKEL  L DE+RSDVIFNVSKTGGHLGS+L
Sbjct: 51  FSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNL 110

Query: 128 GVVKLSVALHYVFNAPQDRILWDVGHQT 156
           GVV+L+VALHY+FN P D+ILWDVGHQ+
Sbjct: 111 GVVELTVALHYIFNTPHDKILWDVGHQS 138

[Close]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match: AT3G21500.1 (1-deoxy-D-xylulose 5-phosphate synthase 1 )

HSP 1 Score: 138.7 bits (348), Expect = 6.8e-33
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0 

Query: 68  YNKLSNSYEKSTPTPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNVSKTGGHLGSSL 127
           +++    Y    PTPLLDTIN+P+HMKNLSIKEL  L DE+RSDVIFNVSKTGGHLGS+L
Sbjct: 51  FSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNL 110

Query: 128 GVVKLSVALHYVFNAPQDRILWDVGHQT 156
           GVV+L+VALHY+FN P D+ILWDVGHQ+
Sbjct: 111 GVVELTVALHYIFNTPHDKILWDVGHQS 138

[Close]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match: AT5G11380.1 (1-deoxy-D-xylulose 5-phosphate synthase 3 )

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 81  TPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNV-SKTGGHLGSSLGVVKLSVALHYV 140
           TP+LD+I  P+ +KNLS+KEL  L DE+R+++   +  KT   +  S   ++L++ALHYV
Sbjct: 75  TPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYV 134

Query: 141 FNAPQDRILWDVGHQT 156
           F AP D ILWD   QT
Sbjct: 135 FRAPVDNILWDAVEQT 150

[Close]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match: AT5G11380.2 (1-deoxy-D-xylulose 5-phosphate synthase 3 )

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 81  TPLLDTINYPIHMKNLSIKELYQLGDEVRSDVIFNV-SKTGGHLGSSLGVVKLSVALHYV 140
           TP+LD+I  P+ +KNLS+KEL  L DE+R+++   +  KT   +  S   ++L++ALHYV
Sbjct: 75  TPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYV 134

Query: 141 FNAPQDRILWDVGHQT 156
           F AP D ILWD   QT
Sbjct: 135 FRAPVDNILWDAVEQT 150

The following BLAST results are available for this feature:
BLAST of MELO3C029143.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458506.18.86e-6168.75PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucu... [more]
XP_004144970.18.86e-6168.75probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucumis sativus... [more]
KAA0033450.19.52e-6168.75putative 1-deoxy-D-xylulose-5-phosphate synthase [Cucumis melo var. makuwa][more]
KAG7026282.14.32e-5663.92putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Cucurbita argyr... [more]
AEM42997.19.55e-5667.071-deoxyxylulose-5-phosphate synthase [Siraitia grosvenorii][more]
BLAST of MELO3C029143.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O783282.0e-3755.77Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annu... [more]
Q388542.7e-3482.721-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana O... [more]
O225673.0e-3380.251-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. ... [more]
Q6YU512.1e-2658.82Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativ... [more]
Q5FUB14.5e-2163.011-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans (strain 621H) O... [more]
BLAST of MELO3C029143.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEI34.29e-6168.751-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis sativus OX=3659 GN=Csa_6G0673... [more]
A0A1S3C8434.29e-6168.751-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis melo OX=3656 GN=LOC103497896 ... [more]
A0A5A7SRA74.61e-6168.751-deoxy-D-xylulose-5-phosphate synthase OS=Cucumis melo var. makuwa OX=1194695 G... [more]
K7NC024.62e-5667.071-deoxy-D-xylulose-5-phosphate synthase OS=Siraitia grosvenorii OX=190515 GN=DXS... [more]
A0A2I0IW235.03e-5362.34TRANSKETOLASE_1 domain-containing protein (Fragment) OS=Punica granatum OX=22663... [more]
BLAST of MELO3C029143.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15560.11.9e-3582.72Deoxyxylulose-5-phosphate synthase [more]
AT3G21500.26.8e-3371.591-deoxy-D-xylulose 5-phosphate synthase 1 [more]
AT3G21500.16.8e-3371.591-deoxy-D-xylulose 5-phosphate synthase 1 [more]
AT5G11380.17.1e-1447.371-deoxy-D-xylulose 5-phosphate synthase 3 [more]
AT5G11380.27.1e-1447.371-deoxy-D-xylulose 5-phosphate synthase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005477Deoxyxylulose-5-phosphate synthasePFAMPF13292DXP_synthase_Ncoord: 38..96
e-value: 1.3E-23
score: 83.6
IPR005477Deoxyxylulose-5-phosphate synthasePANTHERPTHR433221-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATEDcoord: 38..98
NoneNo IPR availableGENE3D3.40.50.970coord: 33..115
e-value: 2.1E-16
score: 61.8
NoneNo IPR availablePANTHERPTHR43322:SF9BNAA01G35430D PROTEINcoord: 38..98
IPR005474Transketolase, N-terminalPROSITEPS00801TRANSKETOLASE_1coord: 47..66
IPR029061Thiamin diphosphate-binding foldSUPERFAMILY52518Thiamin diphosphate-binding fold (THDP-binding)coord: 39..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029143.jh1.t1MELO3C029143.jh1.t1mRNA
MELO3C029143.jh1.t2MELO3C029143.jh1.t2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016114 terpenoid biosynthetic process
molecular_function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity