Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACGTTAGAGCTACTAATAAACGACAATAGGTGTATCACACATACACCGTTCGATACATGCCATAGAATAAGGCAGCTTGCGTACTTTCACATGATACACGAGTCAAATCTTGTGTGTCGCCAAAGCACGCGAATGGACAGACAAACTTTCGCAATTCTATGTCATTTACTTCGAACTGTATCTAGTCTTTCGTCCATCGTGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCTTTGCCCATGACGTGAAGAACCGAATCATTCAAAGGAAATTTGTACGGTCTGGTGAGACAGTATCGCGACATTTTAACCTTATACTATTGGTTGTCGTTCGACTATACGAGGAGTTGATAAAGAGACCTGTTCCGGTGACAAACAACTGCAATGATCAACGTAGGAAGTGTTTCGAGGTGGGCATGGTTCAAGTTTAATGTATTTGAGCTTAATGTACGGGGCACTTATATCGGCGTGTTTATTACAACCTGCAGAATTGCCTTGGCGCGTTAGACGGAATGTACATAAAGGTGAAATGTCCCCACAACAGATTAGCCTACATTCAGAACACGTAAGGGGGAAATTGCCACAAACATACTAGACATGTGCGACACGAATGGAGATTTTTTTATGTCCTCGCCGGTTGGAAAGGATCCGCGGCAGACTCGCGGATTTACGTGATGCCCTTTCACGAGAAAATGGACTACAAGTGTCAAATGGTATATCTTATTTATAATAAAACAACGTCGCTTTCTACTTACCTATTCAAAGCGCTTAAACGAATGTTTTAATAACAGTATATTATTATATGTGCGATGCGAGTTATCCAAATGCGGAGGGGTTTCTTGGCCCGTACAGAGGCCAACGGTACCATTTGCAAGAGTGCCGTGGTGCTGGAAATGCGCCAACAAATACAAAGGAGTACTTCAACATGAAGCACTCCTCGGCAAGGAATGTCATTGAGCGCGCCTTCAGTGTTCTTAAGGGTCGTTGGACCATTCTTCGTGGAAAGTCATACTATCCCCTGTAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTGCTCCACAATTTGATCAACAGAGAAATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAGATAAGATAATTTTACATTACAAGTCATCGATTGTATGCTAATTTCTATCACCTATAAAATGTATTGTTGCATATGAAATGTACGCGTGCCTTTTGTTTATGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTTTGGTAATTTGTCATTCACAGTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCGCAATTTTTATATCAATACTCATAAGTGATCTTTTTTTCCCCGTAGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGAAGCCATACATTTGGCACTCGACCAAACAAACGAGCAACTCAGAATGATTGCAGAGTGACATGCACGCGCCCTTGCTAATGACAACCATGTGTGCATAGAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG
mRNA sequence
ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG
Coding sequence (CDS)
ATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG
Protein sequence
MSVPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKGLLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGEYDEFDMANGNEVFPPVYNQGIDLSQDDVRVSRPSRDSEGKTESSGSKRKRGKFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVLLRDIMR
Homology
BLAST of MELO3C029091 vs. NCBI nr
Match:
KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 324.3 bits (830), Expect = 7.5e-85
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCIIA+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300
BLAST of MELO3C029091 vs. NCBI nr
Match:
KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 170/246 (69.11%), Postives = 183/246 (74.39%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300
BLAST of MELO3C029091 vs. NCBI nr
Match:
KAA0058882.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 319.3 bits (817), Expect = 2.4e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300
BLAST of MELO3C029091 vs. NCBI nr
Match:
TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 11 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 70
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 71 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 130
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 131 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 190
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 191 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 250
BLAST of MELO3C029091 vs. NCBI nr
Match:
KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match:
A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)
HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCIIA+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300
BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match:
A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)
HSP 1 Score: 320.5 bits (820), Expect = 5.3e-84
Identity = 170/246 (69.11%), Postives = 183/246 (74.39%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300
BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match:
A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300
BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match:
A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)
HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match:
A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)
HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0
Query: 3 VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
V ATTVIDCRIKTLKRTFQAIAEM PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 63 LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
+D+SQDDVR SRPSR SEG+T SSGSKRKRG
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240
Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
+FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
BLAST of MELO3C029091 vs. TAIR 10
Match:
AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 48.1 bits (113), Expect = 9.7e-06
Identity = 28/106 (26.42%), Postives = 51/106 (48.11%), Query Frame = 0
Query: 8 VIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKGLLNKS 67
V+ R K L+R + I + E +GF W+ + +IA ++++ ++++HP A+ K+
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436
Query: 68 FPYNDKLTYVFSRHRAMGRFT--------ETFTDVGSNEPGEYDEF 106
P L ++F + + GR+T V NE G D F
Sbjct: 437 IPSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESGSTDGF 480
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0066208.1 | 7.5e-85 | 69.51 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0064022.1 | 1.1e-83 | 69.11 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0058882.1 | 2.4e-83 | 68.70 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK10915.1 | 4.1e-83 | 68.70 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p... | [more] |
KAA0032766.1 | 4.1e-83 | 68.70 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VES2 | 3.6e-85 | 69.51 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7V6Q9 | 5.3e-84 | 69.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7USM3 | 1.2e-83 | 68.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TRV1 | 2.0e-83 | 68.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DCZ1 | 2.0e-83 | 68.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT2G24960.2 | 9.7e-06 | 26.42 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |