MELO3C029091 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029091
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 20609345 .. 20611820 (+)
RNA-Seq Expression	MELO3C029091
Synteny	MELO3C029091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACGTTAGAGCTACTAATAAACGACAATAGGTGTATCACACATACACCGTTCGATACATGCCATAGAATAAGGCAGCTTGCGTACTTTCACATGATACACGAGTCAAATCTTGTGTGTCGCCAAAGCACGCGAATGGACAGACAAACTTTCGCAATTCTATGTCATTTACTTCGAACTGTATCTAGTCTTTCGTCCATCGTGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCTTTGCCCATGACGTGAAGAACCGAATCATTCAAAGGAAATTTGTACGGTCTGGTGAGACAGTATCGCGACATTTTAACCTTATACTATTGGTTGTCGTTCGACTATACGAGGAGTTGATAAAGAGACCTGTTCCGGTGACAAACAACTGCAATGATCAACGTAGGAAGTGTTTCGAGGTGGGCATGGTTCAAGTTTAATGTATTTGAGCTTAATGTACGGGGCACTTATATCGGCGTGTTTATTACAACCTGCAGAATTGCCTTGGCGCGTTAGACGGAATGTACATAAAGGTGAAATGTCCCCACAACAGATTAGCCTACATTCAGAACACGTAAGGGGGAAATTGCCACAAACATACTAGACATGTGCGACACGAATGGAGATTTTTTTATGTCCTCGCCGGTTGGAAAGGATCCGCGGCAGACTCGCGGATTTACGTGATGCCCTTTCACGAGAAAATGGACTACAAGTGTCAAATGGTATATCTTATTTATAATAAAACAACGTCGCTTTCTACTTACCTATTCAAAGCGCTTAAACGAATGTTTTAATAACAGTATATTATTATATGTGCGATGCGAGTTATCCAAATGCGGAGGGGTTTCTTGGCCCGTACAGAGGCCAACGGTACCATTTGCAAGAGTGCCGTGGTGCTGGAAATGCGCCAACAAATACAAAGGAGTACTTCAACATGAAGCACTCCTCGGCAAGGAATGTCATTGAGCGCGCCTTCAGTGTTCTTAAGGGTCGTTGGACCATTCTTCGTGGAAAGTCATACTATCCCCTGTAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTGCTCCACAATTTGATCAACAGAGAAATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAGATAAGATAATTTTACATTACAAGTCATCGATTGTATGCTAATTTCTATCACCTATAAAATGTATTGTTGCATATGAAATGTACGCGTGCCTTTTGTTTATGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTTTGGTAATTTGTCATTCACAGTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCGCAATTTTTATATCAATACTCATAAGTGATCTTTTTTTCCCCGTAGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGAAGCCATACATTTGGCACTCGACCAAACAAACGAGCAACTCAGAATGATTGCAGAGTGACATGCACGCGCCCTTGCTAATGACAACCATGTGTGCATAGAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

mRNA sequence

ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

Coding sequence (CDS)

ATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGAAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGATCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

Protein sequence

MSVPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKGLLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGEYDEFDMANGNEVFPPVYNQGIDLSQDDVRVSRPSRDSEGKTESSGSKRKRGKFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVLLRDIMR

Homology

[Close]

BLAST of MELO3C029091 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 7.5e-85
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCIIA+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 170/246 (69.11%), Postives = 183/246 (74.39%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. NCBI nr
Match: KAA0058882.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.4e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 11  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 70

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 71  LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 130

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 131 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 190

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 191 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 250

[Close]

BLAST of MELO3C029091 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCIIA+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.3e-84
Identity = 170/246 (69.11%), Postives = 183/246 (74.39%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match: A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 169/246 (68.70%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+A+KELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEP-GEYDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEP G YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 208
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of MELO3C029091 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-06
Identity = 28/106 (26.42%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 8   VIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAKKELFDNWVRSHPAAKGLLNKS 67
           V+  R K L+R +  I  + E   +GF W+  +  +IA  ++++ ++++HP A+    K+
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 68  FPYNDKLTYVFSRHRAMGRFT--------ETFTDVGSNEPGEYDEF 106
            P    L ++F +  + GR+T             V  NE G  D F
Sbjct: 437 IPSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESGSTDGF 480

The following BLAST results are available for this feature:

BLAST of MELO3C029091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066208.1	7.5e-85	69.51	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064022.1	1.1e-83	69.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058882.1	2.4e-83	68.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10915.1	4.1e-83	68.70	retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p...	[more]
KAA0032766.1	4.1e-83	68.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029091 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VES2	3.6e-85	69.51	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6Q9	5.3e-84	69.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7USM3	1.2e-83	68.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	2.0e-83	68.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	2.0e-83	68.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C029091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	9.7e-06	26.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..148
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 9..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029091.1	MELO3C029091.1	mRNA