MELO3C028951.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C028951.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor HBP-1b(C38)-like
Locationchr01: 10806372 .. 10807635 (-)
RNA-Seq ExpressionMELO3C028951.jh1
SyntenyMELO3C028951.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGAAAACAATTGAAGAAACAAGAAATGAAACCGAGAAGCAAGAAACGAGCTCAAAAGGCGAGAGGCAAAATCAAGAAATGAGATTAAGTTCACTCTTAGTCCATTTGTAGGTTGAGTTGATAATTTCATAACACGCTTATTTCAGCAGAAGGTCAAATGTCATTCAACTTCAACTCAAAAGTCAAATTTAATTCATGTTTTAGAATTTTGTGAGATTTTATGAGATTTTATGTTTTACGATAAAATTTTAGTTGTTGAGATATTTGTTGTAAGAATTGGAAATTAATAGAATGAAAATAAAAGTTGAGGATATCAATATAATTTATTTTAAAATTGGTTCTTTTATAACTCAAAAAACATTGAACAAATTTTGTTACATACTGATGATTGGAGCATTTTAAAATATTTTTTTCATATTAGCAGTTTTAAAGTTATTTTAGTAATGAAGTACATATACTAACAATAATAGTATTTTAAGAATAGATATTTTTGAAACTTTTCAAAATTTTAATGTTTTCATCTTACACTAATGGTTAGGATGTTTTTAAAATGTTGAAGGCTATTTTAAAATTTTTAAAATTTTTAAAAACCTTTACTTTTTTTTTTTTTTACACAAACAGAAACTTTAAGGGCGTTTCTTTTTAGATAATTTAGGGTTTGTTTGCCTGGTTTAGTGAGGTGAAGTATTCCACGTTTTTTTTTAGCTTGGTAGGGGTTTTGCGAGGATATGAGCAAGGTTAGGGTTTGCATTGTGCATGGTAGGGATGAAGATTTCTCATCCTTTCACGGTTTGTATCCCTTCTTTGTTATTTTATAAAAGCCGATGACGAGGTCCCTTTGTTTTCTTTTTTTTTTTGATATGTTCATGAAATTTTGTTATTCTTTTCTTGAAGATGATGATAAGGTCTCTTTCTTTAGTTCATCGATTTATATTGTTTTTTGTATTTCTTAAGTTTGCTTGCCCAATTGGTGTGTGATTCAATTTTTGTTATCTATTACCATATGAATTTTGATATGATTTCTATTGTTTTGTGTATTTTTCGATCATTGTGATTCTTGGTCTTCTACCACTACAAGAGACGGGGGTGCTCCCGACGCCAAAAAACGTCGGCGAAAATGAAAAGTACGTCAGAAAAGGATATCCCGACGTGTCAAACGGCATCGGGAAGAACGTCGGGAGAAAGATGTCGAGGGAGGCTTTCCCGACGCCGTGTTGGTACGGCGTCAGGAAAACCTCTTTTCTGACTTTTTTTCTGA

mRNA sequence

ATGTTGATGAAAACAATTGAAGAAACAAGAAATGAAACCGAGAAGCAAGAAACGAGCTCAAAAGGCGAGAGGCAAAATCAAGAAATGAGATTAAGTTCACTCTTAGTCCATTTCTTGGTAGGGGTTTTGCGAGGATATGAGCAAGGTTAGGGTTTGCATTGTGCATGGTAGGGATGAAGATTTCTCATCCTTTCACGAGACGGGGGTGCTCCCGACGCCAAAAAACGTCGGCGAAAATGAAAAGTACGTCAGAAAAGGATATCCCGACGTGTCAAACGGCATCGGGAAGAACGTCGGGAGAAAGATGTCGAGGGAGGCTTTCCCGACGCCGTGTTGGTACGGCGTCAGGAAAACCTCTTTTCTGACTTTTTTTCTGA

Coding sequence (CDS)

ATGAGCAAGGTTAGGGTTTGCATTGTGCATGGTAGGGATGAAGATTTCTCATCCTTTCACGAGACGGGGGTGCTCCCGACGCCAAAAAACGTCGGCGAAAATGAAAAGTACGTCAGAAAAGGATATCCCGACGTGTCAAACGGCATCGGGAAGAACGTCGGGAGAAAGATGTCGAGGGAGGCTTTCCCGACGCCGTGTTGGTACGGCGTCAGGAAAACCTCTTTTCTGACTTTTTTTCTG

Protein sequence

MSKVRVCIVHGRDEDFSSFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTSFLTFFL
Homology
[Close]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match: TYK22375.1 (hypothetical protein E5676_scaffold1428G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 5.03e-21
Identity = 42/60 (70.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 13 DEDFSSFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRK 72
          D    S  ETGVL T K VGEN KYV KGYPDV NG+GKNVGR  SREAFPTP WY V K
Sbjct: 24 DPQQESLQETGVLSTHKYVGENAKYVGKGYPDVQNGVGKNVGRNASREAFPTPSWYSVGK 83

[Close]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match: ADN33678.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.57e-20
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRK 72
          S  E  VLPT K VGEN KYV KGYPDV NG+GKNVGR  SREAFPTP WYGV K
Sbjct: 25 SLQEMWVLPTHKYVGENAKYVGKGYPDVQNGVGKNVGRNASREAFPTPIWYGVGK 79

[Close]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match: KAA0037655.1 (hypothetical protein E6C27_scaffold277G003180 [Cucumis melo var. makuwa] >TYK22800.1 hypothetical protein E5676_scaffold311G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.23e-19
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 16 FSSFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTS 74
          + +  ETGVLPTPKNVGENEKYV   +PDV NG+GKNVGR  S EAFPTP   GV K S
Sbjct: 24 YQTLQETGVLPTPKNVGENEKYVGITFPDVPNGVGKNVGRNASGEAFPTPYQRGVGKAS 82

[Close]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match: KAA0050791.1 (hypothetical protein E6C27_scaffold404G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 5.64e-19
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTSFLT 77
          +  ET VLPT K VGEN K+V KGYPDV N +GKNVG   SREAFPTP WYGV KT F T
Sbjct: 5  TLQETWVLPTHKYVGENAKHVGKGYPDVQNDVGKNVGGNASREAFPTPIWYGVGKTLFPT 64

[Close]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match: TYK03727.1 (hypothetical protein E5676_scaffold863G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 7.79e-19
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTS 74
          +  ETGVLPTPKNVGENE YV KGYPDV N + +NV RK SR+AFPTP  +GV K S
Sbjct: 15 ALQETGVLPTPKNVGENEMYVEKGYPDVQNDVRRNVERKASRDAFPTPYQHGVEKAS 71

[Close]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DFP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001000 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.44e-21
Identity = 42/60 (70.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 13 DEDFSSFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRK 72
          D    S  ETGVL T K VGEN KYV KGYPDV NG+GKNVGR  SREAFPTP WY V K
Sbjct: 24 DPQQESLQETGVLSTHKYVGENAKYVGKGYPDVQNGVGKNVGRNASREAFPTPSWYSVGK 83

[Close]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match: E5GB35 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.59e-21
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRK 72
          S  E  VLPT K VGEN KYV KGYPDV NG+GKNVGR  SREAFPTP WYGV K
Sbjct: 25 SLQEMWVLPTHKYVGENAKYVGKGYPDVQNGVGKNVGRNASREAFPTPIWYGVGK 79

[Close]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DHG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00380 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.08e-19
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 16 FSSFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTS 74
          + +  ETGVLPTPKNVGENEKYV   +PDV NG+GKNVGR  S EAFPTP   GV K S
Sbjct: 24 YQTLQETGVLPTPKNVGENEKYVGITFPDVPNGVGKNVGRNASGEAFPTPYQRGVGKAS 82

[Close]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UB47 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00420 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.73e-19
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTSFLT 77
          +  ET VLPT K VGEN K+V KGYPDV N +GKNVG   SREAFPTP WYGV KT F T
Sbjct: 5  TLQETWVLPTHKYVGENAKHVGKGYPDVQNDVGKNVGGNASREAFPTPIWYGVGKTLFPT 64

[Close]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BW51 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001020 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.77e-19
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 18 SFHETGVLPTPKNVGENEKYVRKGYPDVSNGIGKNVGRKMSREAFPTPCWYGVRKTS 74
          +  ETGVLPTPKNVGENE YV KGYPDV N + +NV RK SR+AFPTP  +GV K S
Sbjct: 15 ALQETGVLPTPKNVGENEMYVEKGYPDVQNDVRRNVERKASRDAFPTPYQHGVEKAS 71

The following BLAST results are available for this feature:
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22375.15.03e-2170.00hypothetical protein E5676_scaffold1428G001000 [Cucumis melo var. makuwa][more]
ADN33678.11.57e-2074.55hypothetical protein [Cucumis melo subsp. melo][more]
KAA0037655.12.23e-1967.80hypothetical protein E6C27_scaffold277G003180 [Cucumis melo var. makuwa] >TYK228... [more]
KAA0050791.15.64e-1968.33hypothetical protein E6C27_scaffold404G00420 [Cucumis melo var. makuwa][more]
TYK03727.17.79e-1968.42hypothetical protein E5676_scaffold863G001020 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028951.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFP62.44e-2170.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GB357.59e-2174.55Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3DHG41.08e-1967.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UB472.73e-1968.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BW513.77e-1968.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C028951.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028951.jh1.t1MELO3C028951.jh1.t1mRNA