MELO3C028467 (gene) Melon (DHL92) v4

Overview
NameMELO3C028467
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr08: 27969976 .. 27970401 (+)
RNA-Seq ExpressionMELO3C028467
SyntenyMELO3C028467
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATAGAAACGAGGAGTTCCCGCCCGTGTACAGCTAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTCGCTCTTCAGAGGGTAGGACCGAATCGAGTGGATCCAAGAGGAAGAGAGGAAGTCAGCGAGAGGTTGATGTTGAAGGCATACATTTGGAGCTCGACCAAACAAACAACCAACTCAAGATGATTGCGGAGTGGCCTGCATGCGCCCTTGTCAATGACAACCATGTTCGCACAGAATTCTTCCCCATATTACGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCTTACGAGACATCACGAGATAG

mRNA sequence

ATGGGGGATAGAAACGAGGAGTTCCCGCCCGTGTACAGCTAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTCGCTCTTCAGAGGGTAGGACCGAATCGAGTGGATCCAAGAGGAAGAGAGGAAGTCAGCGAGAGGTTGATGTTGAAGGCATACATTTGGAGCTCGACCAAACAAACAACCAACTCAAGATGATTGCGGAGTGGCCTGCATGCGCCCTTGTCAATGACAACCATGTTCGCACAGAATTCTTCCCCATATTACGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCTTACGAGACATCACGAGATAG

Coding sequence (CDS)

ATGATTGCGGAGTGGCCTGCATGCGCCCTTGTCAATGACAACCATGTTCGCACAGAATTCTTCCCCATATTACGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCTTACGAGACATCACGAGATAG

Protein sequence

MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDERDGFCRVLLRDITR
Homology
[Close]
BLAST of MELO3C028467 vs. NCBI nr
Match: KAA0037742.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER
Sbjct: 59  MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 118

Query: 61  DGFCRVLLRDITR 74
           DGFCRVLLRDITR
Sbjct: 119 DGFCRVLLRDITR 131

[Close]
BLAST of MELO3C028467 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHVRTEFF ILREMPELTSLDRALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 92  MIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 151

Query: 61  DGFCRVLLRDITR 74
           DGFCRVLLRDITR
Sbjct: 152 DGFCRVLLRDITR 164

[Close]
BLAST of MELO3C028467 vs. NCBI nr
Match: KAA0054186.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15077.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPA  LVNDNHVRTEFF ILREMPELTSLDRALLQRHLLSRMDDL+GFVLM EDER
Sbjct: 196 MIAEWPARVLVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDER 255

Query: 61  DGFCRVLLRDITR 74
           +GFCRVLLRDITR
Sbjct: 256 EGFCRVLLRDITR 268

[Close]
BLAST of MELO3C028467 vs. NCBI nr
Match: TYK30732.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHV T+FF ILREMPELTSLDR LLQRHLLSRMDDL+GFVLMP+DER
Sbjct: 167 MIAEWPACALVNDNHVCTKFFLILREMPELTSLDRVLLQRHLLSRMDDLRGFVLMPDDER 226

Query: 61  DGFCRVLLRDITR 74
           +GFCRVLL+DITR
Sbjct: 227 EGFCRVLLQDITR 239

[Close]
BLAST of MELO3C028467 vs. NCBI nr
Match: KAA0062964.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 2   IAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDERD 61
           IAEWPA  L NDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDL+GFVLMPEDER+
Sbjct: 235 IAEWPARNLANDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

Query: 62  GFCRVLLRDITR 74
           GFCRVLLRDI R
Sbjct: 295 GFCRVLLRDIER 306

[Close]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match: A0A5A7T2P7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00380 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER
Sbjct: 59  MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 118

Query: 61  DGFCRVLLRDITR 74
           DGFCRVLLRDITR
Sbjct: 119 DGFCRVLLRDITR 131

[Close]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match: A0A5D3E168 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00050 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.7e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHVRTEFF ILREMPELTSLDRALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 92  MIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 151

Query: 61  DGFCRVLLRDITR 74
           DGFCRVLLRDITR
Sbjct: 152 DGFCRVLLRDITR 164

[Close]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match: A0A5A7UIT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001320 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPA  LVNDNHVRTEFF ILREMPELTSLDRALLQRHLLSRMDDL+GFVLM EDER
Sbjct: 196 MIAEWPARVLVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDER 255

Query: 61  DGFCRVLLRDITR 74
           +GFCRVLLRDITR
Sbjct: 256 EGFCRVLLRDITR 268

[Close]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match: A0A5D3E4A2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00650 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 1   MIAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDER 60
           MIAEWPACALVNDNHV T+FF ILREMPELTSLDR LLQRHLLSRMDDL+GFVLMP+DER
Sbjct: 167 MIAEWPACALVNDNHVCTKFFLILREMPELTSLDRVLLQRHLLSRMDDLRGFVLMPDDER 226

Query: 61  DGFCRVLLRDITR 74
           +GFCRVLL+DITR
Sbjct: 227 EGFCRVLLQDITR 239

[Close]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match: A0A5A7V6W3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00590 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 2   IAEWPACALVNDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDERD 61
           IAEWPA  L NDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDL+GFVLMPEDER+
Sbjct: 235 IAEWPARNLANDNHVRTEFFPILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

Query: 62  GFCRVLLRDITR 74
           GFCRVLLRDI R
Sbjct: 295 GFCRVLLRDIER 306

The following BLAST results are available for this feature:
BLAST of MELO3C028467 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037742.13.6e-34100.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK29656.11.2e-3297.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054186.12.1e-2991.78retrotransposon protein [Cucumis melo var. makuwa] >TYK15077.1 retrotransposon p... [more]
TYK30732.12.1e-2989.04retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062964.12.1e-2991.67retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C028467 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2P71.8e-34100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E1685.7e-3397.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UIT21.0e-2991.78Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E4A21.0e-2989.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6W31.0e-2991.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C028467 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028467.1MELO3C028467.1mRNA