MELO3C028386 (gene) Melon (DHL92) v4

Overview
NameMELO3C028386
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMitochondrial intermembrane space import and assembly protein 40
Locationchr12: 12362754 .. 12362895 (-)
RNA-Seq ExpressionMELO3C028386
SyntenyMELO3C028386
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTATGACCCAAAACGGTGCAAAAGATGGCCAATGCTTCCAACGAGTGACAAACGCTCGTCCAGTGTCAGAAACCACTGGAAATGTACTTACAGTTAAGGA

mRNA sequence

AGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTATGACCCAAAACGGTGCAAAAGATGGCCAATGCTTCCAACGAGTGACAAACGCTCGTCCAGTGTCAGAAACCACTGGAAATGTACTTACAGTTAAGGA

Coding sequence (CDS)

ATGACCCAAAACGGTGCAAAAGATGGCCAATGCTTCCAACGAGTGACAAACGCTCGTCCAGTGTCAGAAACCACTGGAAATGTACTTACAGTTAAG

Protein sequence

MTQNGAKDGQCFQRVTNARPVSETTGNVLTVK
Homology
[Close]
BLAST of MELO3C028386 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 2    TQNGAKDGQCFQRVTNARPVSETTGNVLTVK 33
            TQNG KDGQCFQRV NARPVSETTGN L VK
Sbjct: 1782 TQNGPKDGQCFQRVGNARPVSETTGNALAVK 1812

[Close]
BLAST of MELO3C028386 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 2    TQNGAKDGQCFQRVTNARPVSETTGNVLTVK 33
            TQNG KDGQCFQRV NARPVSETTGN L VK
Sbjct: 1782 TQNGPKDGQCFQRVGNARPVSETTGNALAVK 1812

[Close]
BLAST of MELO3C028386 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-04
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 2   TQNGAKDGQCFQRVTNARPVSETTGNVLTVK 33
           TQNG KDG+ FQRV NARPVSETTGN L  K
Sbjct: 275 TQNGPKDGRSFQRVANARPVSETTGNALAAK 305

[Close]
BLAST of MELO3C028386 vs. ExPASy TrEMBL
Match: A0A5D3CXI0 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00210 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-04
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 2   TQNGAKDGQCFQRVTNARPVSETTGNVLTVK 33
           TQNG KDG+ FQRV NARPVSETTGN L  K
Sbjct: 210 TQNGPKDGRSFQRVANARPVSETTGNALAAK 240

The following BLAST results are available for this feature:
BLAST of MELO3C028386 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C028386 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062888.11.6e-0587.10non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
BLAST of MELO3C028386 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V5J27.5e-0687.10Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7VGB15.4e-0477.42Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
A0A5D3CXI05.4e-0477.42Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
BLAST of MELO3C028386 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028386.1MELO3C028386.1mRNA