MELO3C028358 (gene) Melon (DHL92) v4

Overview
NameMELO3C028358
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr05: 21227193 .. 21227358 (+)
RNA-Seq ExpressionMELO3C028358
SyntenyMELO3C028358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCAACGAGTGGTGAACGCTCGTCCGGTGTTAGAAATCACTTGAAATGCACTTGCAGCGAAGGAAACAAGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCAC

mRNA sequence

CTTCCAACGAGTGGTGAACGCTCGTCCGGTGTTAGAAATCACTTGAAATGCACTTGCAGCGAAGGAAACAAGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCAC

Coding sequence (CDS)

ATGCACTTGCAGCGAAGGAAACAAGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCC

Protein sequence

MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS
Homology
BLAST of MELO3C028358 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
           MHLQRRK+ ELEDFRCSSQEN SENAPDS FSSWGKKRS
Sbjct: 184 MHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRS 222

BLAST of MELO3C028358 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1  MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
          M+LQRRKQ EL+DF CSSQENAS+NAPDS FSSWGKKRS
Sbjct: 20 MYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRS 58

BLAST of MELO3C028358 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
           M LQ+RK+AELEDF+CSS ENASENA DSV+SSWGKKRS
Sbjct: 65  MQLQQRKRAELEDFQCSSLENASENAKDSVYSSWGKKRS 103

BLAST of MELO3C028358 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1  MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
          MHLQ+RK+AELEDF   SQEN SENA + VFSSWGKK S
Sbjct: 20 MHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGS 58

BLAST of MELO3C028358 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 3    LQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
            LQR K+ EL+DFRCSSQENA+E APDS+FSS  KKRS
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRS 1466

BLAST of MELO3C028358 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
           MHLQRRK+ ELEDFRCSSQEN SENAPDS FSSWGKKRS
Sbjct: 184 MHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRS 222

BLAST of MELO3C028358 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1  MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
          M+LQRRKQ EL+DF CSSQENAS+NAPDS FSSWGKKRS
Sbjct: 20 MYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRS 58

BLAST of MELO3C028358 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
           M LQ+RK+AELEDF+CSS ENASENA DSV+SSWGKKRS
Sbjct: 65  MQLQQRKRAELEDFQCSSLENASENAKDSVYSSWGKKRS 103

BLAST of MELO3C028358 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1  MHLQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
          MHLQ+RK+AELEDF   SQEN SENA + VFSSWGKK S
Sbjct: 20 MHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGS 58

BLAST of MELO3C028358 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 3    LQRRKQAELEDFRCSSQENASENAPDSVFSSWGKKRS 40
            LQR K+ EL+DFRCSSQENA+E APDS+FSS  KKRS
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRS 1466

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK22521.19.7e-1089.74uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0057641.13.1e-0884.62hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
KAA0040927.13.5e-0782.05hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061... [more]
KAA0035524.12.1e-0474.36NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t... [more]
KAA0062888.12.7e-0475.68non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFP24.7e-1089.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UVV01.5e-0884.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGX31.7e-0782.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E5W41.0e-0474.36NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7V5J21.3e-0475.68Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028358.1MELO3C028358.1mRNA