Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCTATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAGCG
mRNA sequence
ATTATCTATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAGCG
Coding sequence (CDS)
ATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAG
Protein sequence
MRGRIKRIKAEIRDSEIEVSLRLRGNQTPNQGCLLPSKFKIPEPKAFNGNRDPTFKLHFGYGRILSSQWNHAT
Homology
BLAST of MELO3C028095 vs. NCBI nr
Match:
WP_217833205.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
R ++ I+AE+ + + +V+L +R GNQTPNQ +P++FKIPEPKAF+GNRD
Sbjct: 17 RATVETIRAEMTEMKTQVNLTMRAVGNQTPNQTLAMPNRFKIPEPKAFSGNRD 69
BLAST of MELO3C028095 vs. NCBI nr
Match:
KAA0065446.1 (uncharacterized protein E6C27_scaffold17G001270 [Cucumis melo var. makuwa])
HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
RG I+ IK E+ + +++V+L ++ GNQTPNQ + KFKI EPKAFNGNRD
Sbjct: 57 RGTIETIKVEMDEMKVQVNLMIQAVGNQTPNQAYSVSCKFKISEPKAFNGNRD 109
BLAST of MELO3C028095 vs. NCBI nr
Match:
KAA0048463.1 (uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa] >TYK28260.1 uncharacterized protein E5676_scaffold600G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSL--RLRGNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
R I+ IKAE+ + +I V+L RL GNQT NQ + SKFKIP+PKAFNGNRD
Sbjct: 6 RATIETIKAEMAEMKIYVNLMMRLVGNQTENQVHSVSSKFKIPKPKAFNGNRD 58
BLAST of MELO3C028095 vs. NCBI nr
Match:
KAA0067610.1 (uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa])
HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query: 5 IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
I++I+AE+ +++V+L +R GNQT N C + SK KIPEPKAFNGNRD
Sbjct: 16 IEKIEAEMAKMKMQVNLTMRAAGNQTLNPVCSVSSKLKIPEPKAFNGNRD 65
BLAST of MELO3C028095 vs. NCBI nr
Match:
KAA0067615.1 (uncharacterized protein E6C27_scaffold485G00840 [Cucumis melo var. makuwa] >TYJ97147.1 uncharacterized protein E5676_scaffold174G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
R K+I+ E+ +++V+L +R GNQT N C + SK KIPEPKAFNGNRD
Sbjct: 13 RATTKKIEVEMAKMKMQVNLTMRVVGNQTSNPVCSVSSKLKIPEPKAFNGNRD 65
BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match:
A0A5A7VGJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001270 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 7.7e-06
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
RG I+ IK E+ + +++V+L ++ GNQTPNQ + KFKI EPKAFNGNRD
Sbjct: 57 RGTIETIKVEMDEMKVQVNLMIQAVGNQTPNQAYSVSCKFKISEPKAFNGNRD 109
BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match:
A0A5D3DYE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00660 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSL--RLRGNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
R I+ IKAE+ + +I V+L RL GNQT NQ + SKFKIP+PKAFNGNRD
Sbjct: 6 RATIETIKAEMAEMKIYVNLMMRLVGNQTENQVHSVSSKFKIPKPKAFNGNRD 58
BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match:
A0A5D3BDE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00210 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query: 2 RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
R K+I+ E+ +++V+L +R GNQT N C + SK KIPEPKAFNGNRD
Sbjct: 13 RATTKKIEVEMAKMKMQVNLTMRVVGNQTSNPVCSVSSKLKIPEPKAFNGNRD 65
BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match:
A0A5D3BTI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00960 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query: 5 IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
I+ IK ++ D +++V+L +R GNQTPNQ C + S+ KIP+PKAFN NRD
Sbjct: 109 IETIKTKMADMKMQVNLTMRVVGNQTPNQVCNISSRVKIPKPKAFNRNRD 158
BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match:
A0A5A7VKA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00780 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query: 5 IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
I++I+AE+ +++V+L +R GNQT N C + SK KIPEPKAFNGNRD
Sbjct: 16 IEKIEAEMAKMKMQVNLTMRAAGNQTLNPVCSVSSKLKIPEPKAFNGNRD 65
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
WP_217833205.1 | 3.2e-06 | 52.83 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
KAA0065446.1 | 1.6e-05 | 54.72 | uncharacterized protein E6C27_scaffold17G001270 [Cucumis melo var. makuwa] | [more] |
KAA0048463.1 | 3.5e-05 | 60.38 | uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa] >TYK28... | [more] |
KAA0067610.1 | 1.0e-04 | 56.00 | uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa] | [more] |
KAA0067615.1 | 1.0e-04 | 52.83 | uncharacterized protein E6C27_scaffold485G00840 [Cucumis melo var. makuwa] >TYJ9... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VGJ1 | 7.7e-06 | 54.72 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DYE0 | 1.7e-05 | 60.38 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BDE3 | 5.0e-05 | 52.83 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BTI7 | 5.0e-05 | 54.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VKA0 | 5.0e-05 | 56.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |