MELO3C028095 (gene) Melon (DHL92) v4

Overview
NameMELO3C028095
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr01: 27138890 .. 27139120 (-)
RNA-Seq ExpressionMELO3C028095
SyntenyMELO3C028095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCTATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAGCG

mRNA sequence

ATTATCTATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAGCG

Coding sequence (CDS)

ATGAGAGGGAGGATAAAGAGAATCAAGGCCGAGATCCGAGATTCAGAGATAGAAGTGAGTTTAAGGCTGCGAGGAAACCAGACCCCGAATCAAGGATGTCTTCTTCCAAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGCGATCCTACTTTCAAATTGCATTTTGGATATGGAAGAATACTTTCAAGCCAGTGGAACCATGCCACGTAG

Protein sequence

MRGRIKRIKAEIRDSEIEVSLRLRGNQTPNQGCLLPSKFKIPEPKAFNGNRDPTFKLHFGYGRILSSQWNHAT
Homology
BLAST of MELO3C028095 vs. NCBI nr
Match: WP_217833205.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 2  RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          R  ++ I+AE+ + + +V+L +R  GNQTPNQ   +P++FKIPEPKAF+GNRD
Sbjct: 17 RATVETIRAEMTEMKTQVNLTMRAVGNQTPNQTLAMPNRFKIPEPKAFSGNRD 69

BLAST of MELO3C028095 vs. NCBI nr
Match: KAA0065446.1 (uncharacterized protein E6C27_scaffold17G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 2   RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
           RG I+ IK E+ + +++V+L ++  GNQTPNQ   +  KFKI EPKAFNGNRD
Sbjct: 57  RGTIETIKVEMDEMKVQVNLMIQAVGNQTPNQAYSVSCKFKISEPKAFNGNRD 109

BLAST of MELO3C028095 vs. NCBI nr
Match: KAA0048463.1 (uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa] >TYK28260.1 uncharacterized protein E5676_scaffold600G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 2  RGRIKRIKAEIRDSEIEVSL--RLRGNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          R  I+ IKAE+ + +I V+L  RL GNQT NQ   + SKFKIP+PKAFNGNRD
Sbjct: 6  RATIETIKAEMAEMKIYVNLMMRLVGNQTENQVHSVSSKFKIPKPKAFNGNRD 58

BLAST of MELO3C028095 vs. NCBI nr
Match: KAA0067610.1 (uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 5  IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          I++I+AE+   +++V+L +R  GNQT N  C + SK KIPEPKAFNGNRD
Sbjct: 16 IEKIEAEMAKMKMQVNLTMRAAGNQTLNPVCSVSSKLKIPEPKAFNGNRD 65

BLAST of MELO3C028095 vs. NCBI nr
Match: KAA0067615.1 (uncharacterized protein E6C27_scaffold485G00840 [Cucumis melo var. makuwa] >TYJ97147.1 uncharacterized protein E5676_scaffold174G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 2  RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          R   K+I+ E+   +++V+L +R  GNQT N  C + SK KIPEPKAFNGNRD
Sbjct: 13 RATTKKIEVEMAKMKMQVNLTMRVVGNQTSNPVCSVSSKLKIPEPKAFNGNRD 65

BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match: A0A5A7VGJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001270 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.7e-06
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 2   RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
           RG I+ IK E+ + +++V+L ++  GNQTPNQ   +  KFKI EPKAFNGNRD
Sbjct: 57  RGTIETIKVEMDEMKVQVNLMIQAVGNQTPNQAYSVSCKFKISEPKAFNGNRD 109

BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match: A0A5D3DYE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00660 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 2  RGRIKRIKAEIRDSEIEVSL--RLRGNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          R  I+ IKAE+ + +I V+L  RL GNQT NQ   + SKFKIP+PKAFNGNRD
Sbjct: 6  RATIETIKAEMAEMKIYVNLMMRLVGNQTENQVHSVSSKFKIPKPKAFNGNRD 58

BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match: A0A5D3BDE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00210 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 2  RGRIKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          R   K+I+ E+   +++V+L +R  GNQT N  C + SK KIPEPKAFNGNRD
Sbjct: 13 RATTKKIEVEMAKMKMQVNLTMRVVGNQTSNPVCSVSSKLKIPEPKAFNGNRD 65

BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match: A0A5D3BTI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00960 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 5   IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
           I+ IK ++ D +++V+L +R  GNQTPNQ C + S+ KIP+PKAFN NRD
Sbjct: 109 IETIKTKMADMKMQVNLTMRVVGNQTPNQVCNISSRVKIPKPKAFNRNRD 158

BLAST of MELO3C028095 vs. ExPASy TrEMBL
Match: A0A5A7VKA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00780 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 5  IKRIKAEIRDSEIEVSLRLR--GNQTPNQGCLLPSKFKIPEPKAFNGNRD 53
          I++I+AE+   +++V+L +R  GNQT N  C + SK KIPEPKAFNGNRD
Sbjct: 16 IEKIEAEMAKMKMQVNLTMRAAGNQTLNPVCSVSSKLKIPEPKAFNGNRD 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833205.13.2e-0652.83retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0065446.11.6e-0554.72uncharacterized protein E6C27_scaffold17G001270 [Cucumis melo var. makuwa][more]
KAA0048463.13.5e-0560.38uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa] >TYK28... [more]
KAA0067610.11.0e-0456.00uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa][more]
KAA0067615.11.0e-0452.83uncharacterized protein E6C27_scaffold485G00840 [Cucumis melo var. makuwa] >TYJ9... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VGJ17.7e-0654.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DYE01.7e-0560.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDE35.0e-0552.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTI75.0e-0554.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKA05.0e-0556.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028095.1MELO3C028095.1mRNA