MELO3C028043 (gene) Melon (DHL92) v4

Overview
NameMELO3C028043
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr01: 25077488 .. 25077893 (+)
RNA-Seq ExpressionMELO3C028043
SyntenyMELO3C028043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGGAAGCGGGTCTCGGGTCGGGTCAGCTTGAAACCGGGGCAACCACGAGCGACGGTCTTCGGCATTCGACGACGGGGACGCTTCGCAGCTTGGAGGAGTCCGACGATCGGCTACGCTTCAACGTGGCGGAGAGCGACTGGGCGTCGGCGGACACGGTTGGACGAAGGACGCACGGCGGCGTCCGATTACGTGAGACCGAGAGAGAGATCGGAGATGGATGGGCTGCGACGAACGAGCGGTGGAGCTACGAAGTTGCCGACGACGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAAGAAAACGGGCGGAGGCGGCGTGAAAACGAGGATGAAGAAGGCGAAAAGGAAGATGTCAGCTGGGGGGGGACGCGCGCGACTAGGGTTATTTAAAAAAA

mRNA sequence

ACTGGAAGCGGGTCTCGGGTCGGGTCAGCTTGAAACCGGGGCAACCACGAGCGACGGTCTTCGGCATTCGACGACGGGGACGCTTCGCAGCTTGGAGGAGTCCGACGATCGGCTACGCTTCAACGTGGCGGAGAGCGACTGGGCGTCGGCGGACACGGTTGGACGAAGGACGCACGGCGGCGTCCGATTACGTGAGACCGAGAGAGAGATCGGAGATGGATGGGCTGCGACGAACGAGCGGTGGAGCTACGAAGTTGCCGACGACGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAAGAAAACGGGCGGAGGCGGCGTGAAAACGAGGATGAAGAAGGCGAAAAGGAAGATGTCAGCTGGGGGGGGACGCGCGCGACTAGGGTTATTTAAAAAAA

Coding sequence (CDS)

TGGAAGCGGGTCTCGGGTCGGGTCAGCTTGAAACCGGGGCAACCACGAGCGACGGTCTTCGGCATTCGACGACGGGGACGCTTCGCAGCTTGGAGGAGTCCGACGATCGGCTACGCTTCAACGTGGCGGAGAGCGACTGGGCGTCGGCGGACACGGTTGGACGAAGGACGCACGGCGGCGTCCGATTACGTGAGACCGAGAGAGAGATCGGAGATGGATGGGCTGCGACGAACGAGCGGTGGAGCTACGAAGTTGCCGACGACGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAAGAAAACGGGCGGAGGCGGCGTGAAAACGAGGATGAAGAAGGCGAAAAGGAAGATGTCAGCTGGGGGGGGACGCGCGCGACTAGGGTTATTTAA

Protein sequence

WKRVSGRVSLKPGQPRATVFGIRRRGRFAAWRSPTIGYASTWRRATGRRRTRLDEGRTAASDYVRPRERSEMDGLRRTSGGATKLPTTETETEVETRTEGKKENGRRRRENEDEEGEKEDVSWGGTRATRVI
Homology
BLAST of MELO3C028043 vs. NCBI nr
Match: KAA0063392.1 (hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 9   SLKPGQPRATVFGIRRRGRFAAWRSPTIGYASTWRRATGRRRTRLDEGRTAASDYVRPRE 68
           SLK GQPRATVFG+RRRGRFAA RSP  G AST RRAT  RRT+LDEGRTAAS YVRPR 
Sbjct: 147 SLKHGQPRATVFGVRRRGRFAACRSPITGSASTRRRATRHRRTQLDEGRTAASGYVRPRG 206

Query: 69  RSEMDGLRRTSGGATKLPTTETETEVETRTEGKKENGRR 108
            SEMDG RRT  G  +LPTTETET V  + EG  E G R
Sbjct: 207 SSEMDGPRRTKAGVVRLPTTETET-VPPQREGDGEKGLR 244

BLAST of MELO3C028043 vs. NCBI nr
Match: KAA0042021.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-17
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 5   SGRVSLKPGQPRATVFGIRRRGRFAAWRSPTIGYASTWRRATGRRRTRLDEGRTAASDYV 64
           SGRVSLK GQPRATVF ++RRGRFAAWRSPT   AST R ATGRRRTR DEGRT AS  V
Sbjct: 192 SGRVSLKLGQPRATVFDVQRRGRFAAWRSPTTDSASTQRSATGRRRTRSDEGRTVASGCV 251

Query: 65  RPRERSEMDGL 76
           RPR RS+M+ +
Sbjct: 252 RPRGRSKMEAV 262

BLAST of MELO3C028043 vs. NCBI nr
Match: TYK00360.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-04
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 1   WKRVSGRVSLKPGQPRATVFGIRRRG 27
           WKRVSGRVSLKPGQPR T+FG+RRRG
Sbjct: 84  WKRVSGRVSLKPGQPRVTIFGVRRRG 109

BLAST of MELO3C028043 vs. ExPASy TrEMBL
Match: A0A5A7V558 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00220 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 9   SLKPGQPRATVFGIRRRGRFAAWRSPTIGYASTWRRATGRRRTRLDEGRTAASDYVRPRE 68
           SLK GQPRATVFG+RRRGRFAA RSP  G AST RRAT  RRT+LDEGRTAAS YVRPR 
Sbjct: 147 SLKHGQPRATVFGVRRRGRFAACRSPITGSASTRRRATRHRRTQLDEGRTAASGYVRPRG 206

Query: 69  RSEMDGLRRTSGGATKLPTTETETEVETRTEGKKENGRR 108
            SEMDG RRT  G  +LPTTETET V  + EG  E G R
Sbjct: 207 SSEMDGPRRTKAGVVRLPTTETET-VPPQREGDGEKGLR 244

BLAST of MELO3C028043 vs. ExPASy TrEMBL
Match: A0A5A7TKE1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004670 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.1e-18
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 5   SGRVSLKPGQPRATVFGIRRRGRFAAWRSPTIGYASTWRRATGRRRTRLDEGRTAASDYV 64
           SGRVSLK GQPRATVF ++RRGRFAAWRSPT   AST R ATGRRRTR DEGRT AS  V
Sbjct: 192 SGRVSLKLGQPRATVFDVQRRGRFAAWRSPTTDSASTQRSATGRRRTRSDEGRTVASGCV 251

Query: 65  RPRERSEMDGL 76
           RPR RS+M+ +
Sbjct: 252 RPRGRSKMEAV 262

BLAST of MELO3C028043 vs. ExPASy TrEMBL
Match: A0A5D3BN31 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00240 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 1   WKRVSGRVSLKPGQPRATVFGIRRRG 27
           WKRVSGRVSLKPGQPR T+FG+RRRG
Sbjct: 84  WKRVSGRVSLKPGQPRVTIFGVRRRG 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063392.12.3e-2371.72hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa][more]
KAA0042021.11.5e-1774.65NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK00360.15.4e-0488.46NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V5581.1e-2371.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TKE17.1e-1874.65NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BN312.6e-0488.46NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028043.1MELO3C028043.1mRNA