MELO3C027732 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027732
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Vesicle transport protein
Location	chr01: 13368641 .. 13368917 (+)
RNA-Seq Expression	MELO3C027732
Synteny	MELO3C027732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTGATGCCTCAAAAGTTTGCCATCTGCTTTACGCTTGGATGTTGCTTCATCATTGGATCCTTTTTTGCTCTCAAGGGTCCGAAGAATCAGCTTGCACATATGTTCTCAAAAGAGGTATGCTTGATATTTCTTTCATTACATTTCTATCAAAACCCTCTCGATATTTTAGCTGATTCGCTTCTGTTATTTGTTCCTTTGTTTCATGATGCAGAGACTTCCTTTTACAGTGATCTTTATTGGTAGTATGTTGGGCACCTTATATGTTTCCATG

mRNA sequence

ATGGTTCTGATGCCTCAAAAGTTTGCCATCTGCTTTACGCTTGGATGTTGCTTCATCATTGGATCCTTTTTTGCTCTCAAGGGTCCGAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACAGTGATCTTTATTGGTAGTATGTTGGGCACCTTATATGTTTCCATG

Coding sequence (CDS)

ATGGTTCTGATGCCTCAAAAGTTTGCCATCTGCTTTACGCTTGGATGTTGCTTCATCATTGGATCCTTTTTTGCTCTCAAGGGTCCGAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACAGTGATCTTTATTGGTAGTATGTTGGGCACCTTATATGTTTCCATG

Protein sequence

MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM

Homology

[Close]

BLAST of MELO3C027732 vs. NCBI nr
Match: KGN44446.2 (hypothetical protein Csa_015684 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 120 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 179

[Close]

BLAST of MELO3C027732 vs. NCBI nr
Match: XP_004139775.1 (protein transport protein SFT2 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 120 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 179

[Close]

BLAST of MELO3C027732 vs. NCBI nr
Match: KAA0032103.1 (protein transport protein SFT2-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 224 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 283

[Close]

BLAST of MELO3C027732 vs. NCBI nr
Match: TYK23157.1 (protein transport protein SFT2-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 101 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 160

[Close]

BLAST of MELO3C027732 vs. NCBI nr
Match: KAA0046959.1 (protein transport protein SFT2-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MV+MPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 206 MVMMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 265

[Close]

BLAST of MELO3C027732 vs. ExPASy Swiss-Prot
Match: P38166 (Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SFT2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-04
Identity = 19/53 (35.85%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 5   PQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLY 58
           P+KF + +T+G    + +F  L GP   L H+ ++ERLPF++ F  +   T+Y
Sbjct: 109 PRKFGLLWTMGSLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIY 161

[Close]

BLAST of MELO3C027732 vs. ExPASy TrEMBL
Match: A0A5A7SP34 (Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00840 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 224 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 283

[Close]

BLAST of MELO3C027732 vs. ExPASy TrEMBL
Match: A0A5D3DHM0 (Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001760 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 101 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 160

[Close]

BLAST of MELO3C027732 vs. ExPASy TrEMBL
Match: A0A0A0K5A9 (Vesicle transport protein OS=Cucumis sativus OX=3659 GN=Csa_7G200820 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 61  MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 120

[Close]

BLAST of MELO3C027732 vs. ExPASy TrEMBL
Match: A0A5A7U0F1 (Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001420 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MV+MPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM
Sbjct: 206 MVMMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 265

[Close]

BLAST of MELO3C027732 vs. ExPASy TrEMBL
Match: A0A5A7T9C1 (Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00330 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPF VIFIGSMLGTLYVSM
Sbjct: 224 MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFIVIFIGSMLGTLYVSM 283

[Close]

BLAST of MELO3C027732 vs. TAIR 10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-22
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGC FIIGSFFAL+GPKNQLAHM S ERLP T+ FI +M+GT+YVSM
Sbjct: 115 MVLMPQKFAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSM 174

[Close]

BLAST of MELO3C027732 vs. TAIR 10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-22
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 60
           MVLMPQKFAICFTLGC FIIGSFFAL+GP+NQLAHM S ERLP T+ FI +M+GT+YVSM
Sbjct: 120 MVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTIYVSM 179

[Close]

BLAST of MELO3C027732 vs. TAIR 10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 41.2 bits (95), Expect = 3.4e-04
Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 4   MPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSM 61
           +P KFA+ FT G    IGS   L GP+ Q++ MF   R   T I+IG ++  L  ++
Sbjct: 61  IPIKFALLFTFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICAL 117

The following BLAST results are available for this feature:

BLAST of MELO3C027732 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44446.2	1.9e-25	100.00	hypothetical protein Csa_015684 [Cucumis sativus]	[more]
XP_004139775.1	1.9e-25	100.00	protein transport protein SFT2 [Cucumis sativus]	[more]
KAA0032103.1	1.9e-25	100.00	protein transport protein SFT2-like [Cucumis melo var. makuwa]	[more]
TYK23157.1	1.9e-25	100.00	protein transport protein SFT2-like [Cucumis melo var. makuwa]	[more]
KAA0046959.1	3.3e-25	98.33	protein transport protein SFT2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027732 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38166	2.0e-04	35.85	Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]

BLAST of MELO3C027732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SP34	9.4e-26	100.00	Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DHM0	9.4e-26	100.00	Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0K5A9	9.4e-26	100.00	Vesicle transport protein OS=Cucumis sativus OX=3659 GN=Csa_7G200820 PE=3 SV=1	[more]
A0A5A7U0F1	1.6e-25	98.33	Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5A7T9C1	4.7e-25	98.33	Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of MELO3C027732 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26550.1	2.8e-22	81.67	Got1/Sft2-like vescicle transport protein family	[more]
AT5G56020.1	4.8e-22	80.00	Got1/Sft2-like vescicle transport protein family	[more]
AT5G24170.1	3.4e-04	38.60	Got1/Sft2-like vescicle transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 3..59 e-value: 1.0E-18 score: 67.8
None	No IPR available	PANTHER	PTHR23137:SF36	VESICLE TRANSPORT PROTEIN SFT2C	coord: 1..60
IPR011691	Vesicle transport protein SFT2	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027732.1	MELO3C027732.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane