MELO3C027712 (gene) Melon (DHL92) v4

Overview
NameMELO3C027712
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr02: 19081852 .. 19082125 (-)
RNA-Seq ExpressionMELO3C027712
SyntenyMELO3C027712
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGACGAAAAAACTGAGTCCGGGGCATTCTCGCTCGTGTTTTCTTGGGACGAGCACCAGAAGTCCTCGAGCTCAACCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTGGTTTTTGACACTGGACGAGCGTTCGCCACTCGTTGGAAGCATTGGCCATTTTTTGGACTGTTTTGGATCGCACCACAGTTCTCCCTCCAACGAGCTCGCTTCCCGACCTATACCTTTGGAAAACGTGTCAGGGAGTATGCCAGGAGTGTGGGTTGAAGTCCTCGGA

mRNA sequence

AGGACGAAAAAACTGAGTCCGGGGCATTCTCGCTCGTGTTTTCTTGGGACGAGCACCAGAAGTCCTCGAGCTCAACCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTGGTTTTTGACACTGGACGAGCGTTCGCCACTCGTTGGAAGCATTGGCCATTTTTTGGACTGTTTTGGATCGCACCACAGTTCTCCCTCCAACGAGCTCGCTTCCCGACCTATACCTTTGGAAAACGTGTCAGGGAGTATGCCAGGAGTGTGGGTTGAAGTCCTCGGA

Coding sequence (CDS)

AGGACGAAAAAACTGAGTCCGGGGCATTCTCGCTCGTGTTTTCTTGGGACGAGCACCAGAAGTCCTCGAGCTCAACCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTGGTTTTTGACACTGGACGAGCGTTCGCCACTCGTTGGAAGCATTGGCCATTTTTTGGACTGTTTTGGATCGCACCACAGTTCTCCCTCCAACGAGCTCGCTTCCCGACCTATACCTTTGGAAAACGTGTCAGGGAGTATGCCAGGAGTGTGGGTTGA

Protein sequence

RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIAPQFSLQRARFPTYTFGKRVREYARSVG
Homology
BLAST of MELO3C027712 vs. NCBI nr
Match: KAA0065855.1 (hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           +T+KLSPGHSRS FLGTST SPRAQPVSFAASAFPVV DTGRAFATRWK  P FG FW+A
Sbjct: 14  KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

Query: 61  PQFSLQRARFPTYTFGKRVREYARSVG 88
           PQFSL+RARFPTYT GKRVRE+ARSVG
Sbjct: 74  PQFSLKRARFPTYTSGKRVREHARSVG 100

BLAST of MELO3C027712 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           RT+KLSP HSRS FLGTST SPRA PVSFAASAF VV DTGRAF +RWKHWP FG FW+A
Sbjct: 27  RTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFTSRWKHWPSFGPFWVA 86

Query: 61  PQFSLQRARFPTYTFGKRVREYA 84
           PQFSLQRARFPTYTFGK VRE+A
Sbjct: 87  PQFSLQRARFPTYTFGKHVREHA 109

BLAST of MELO3C027712 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           RT+KLSP HSRS FLGTST SPRA PVSFAASAF VV DTGRAFA+RWKHWP FG FW+A
Sbjct: 27  RTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFASRWKHWPSFGPFWVA 86

Query: 61  PQFSLQRARFPTYTFGKRVREYA 84
           PQFSLQRARFPTYTF K VRE+A
Sbjct: 87  PQFSLQRARFPTYTFEKHVREHA 109

BLAST of MELO3C027712 vs. NCBI nr
Match: KAA0046850.1 (hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVF 39
           R +KL  GHSRS FLGTST SPRA+PVSFAASAF VVF
Sbjct: 191 RMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVVF 228

BLAST of MELO3C027712 vs. ExPASy TrEMBL
Match: A0A5A7VJF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00010 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           +T+KLSPGHSRS FLGTST SPRAQPVSFAASAFPVV DTGRAFATRWK  P FG FW+A
Sbjct: 14  KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

Query: 61  PQFSLQRARFPTYTFGKRVREYARSVG 88
           PQFSL+RARFPTYT GKRVRE+ARSVG
Sbjct: 74  PQFSLKRARFPTYTSGKRVREHARSVG 100

BLAST of MELO3C027712 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           RT+KLSP HSRS FLGTST SPRA PVSFAASAF VV DTGRAF +RWKHWP FG FW+A
Sbjct: 27  RTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFTSRWKHWPSFGPFWVA 86

Query: 61  PQFSLQRARFPTYTFGKRVREYA 84
           PQFSLQRARFPTYTFGK VRE+A
Sbjct: 87  PQFSLQRARFPTYTFGKHVREHA 109

BLAST of MELO3C027712 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVFDTGRAFATRWKHWPFFGLFWIA 60
           RT+KLSP HSRS FLGTST SPRA PVSFAASAF VV DTGRAFA+RWKHWP FG FW+A
Sbjct: 27  RTRKLSPRHSRSHFLGTSTESPRALPVSFAASAFSVVSDTGRAFASRWKHWPSFGPFWVA 86

Query: 61  PQFSLQRARFPTYTFGKRVREYA 84
           PQFSLQRARFPTYTF K VRE+A
Sbjct: 87  PQFSLQRARFPTYTFEKHVREHA 109

BLAST of MELO3C027712 vs. ExPASy TrEMBL
Match: A0A5A7TUM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00010 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 1   RTKKLSPGHSRSCFLGTSTRSPRAQPVSFAASAFPVVF 39
           R +KL  GHSRS FLGTST SPRA+PVSFAASAF VVF
Sbjct: 191 RMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVVF 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065855.12.4e-3285.06hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa][more]
KAA0062674.11.0e-3083.13uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa][more]
TYK01208.12.9e-3083.13uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa][more]
KAA0046850.15.5e-0578.95hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VJF71.2e-3285.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V5Z64.8e-3183.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BQ751.4e-3083.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TUM92.7e-0578.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027712.1MELO3C027712.1mRNA