MELO3C027566.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C027566.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	scaffold_mitochondria: 1757760 .. 1758610 (+)
RNA-Seq Expression	MELO3C027566.jh1
Synteny	MELO3C027566.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAACCGAGAAATTGCCAAGTTTTCAAGGATGAGTTGATCTCAGAGAATTTGCTTAAGACATTCATTCAGAGATTGATCAAGAAAAGAAGAAGAAAGATAGAAAAAGCTAGAACTACCGAGAAAGAATATCATCCCAATTCTCAGACAAAGAAAAGAAGGCACCCAATACTGAAAGAGGGTAGATGGCCAGCTACAGCTAAGCGGAGAAAAACTTCTCTACTTTTGGGAGAGAATAGACCAGAGAGGAAGCATCACTTATCTCGGAAGAGAAAGGGACCATACGGACTACGGCAAGGGCTCCGACCTTTCCCTATAGGTGGTCTATCAATCTCCATTCTCATCAGTGAAGGAGAGTTAACGGCTAGAACAACTGAGCTTAGTCGGAATCCACTAAGACAAATTTGAAACCTAAATACAATAAAAAAGGAGGAGGCATGGGTATGATTCTGGCATTCTGTGAAGACAGTGAAGTTGAACAAGAAATGGGAGAGAAAGAGCGAAATAGATCGACGGGCCGGACCCAAGCAGAGTGAGTTGCGGCTGGAGAGTCATCAGTCGGCCTTGAATGAGGCAGGAGGTTCAAAGAATATTGACCAAGAGAATCAAAACTCCCCACCATAATGCACCAGATCTAGAACGAGGAAGCGAACCCCACTGCTGGAAGCGAATAAGCTGCTCGCTCGCTTTAATTAATAGAAGTACGAAAGCAGAATCGGAAGCGAACCCCACCTCTTTCCGGTCCCGTTGATGAATCGCATACGAAGTAGATTGAGTTTCAGTATCCTACCCTAGGGTGCTCTTGAATCTGGAGTTCGAACCTTATATCATTAATAAGAAAGGATTCC

mRNA sequence

ATGCAAGAACCGAGAAATTGCCAAGTTTTCAAGGATGAGTTGATCTCAGAGAATTTGCTTAAGACATTCATTCAGAGATTGATCAAGAAAAGAAGAAGAAAGATAGAAAAAGCTAGAACTACCGAGAAAGAATATCATCCCAATTCTCAGACAAAGAAAAGAAGGCACCCAATACTGAAAGAGGGTAGATGGCCAGCTACAGCTAAGCGGAGAAAAACTTCTCTACTTTTGGGAGAGAATAGACCAGAGAGGAAGCATCACTTATCTCGGAAGAGAAAGGGACCATACGGACTACGGCAAGGGCTCCGACCTTTCCCTATAGGTGGTCTATCAATCTCCATTCTCATCAGTGAAGGAGAGTTAACGGCTAGAACAACTGAGCTTAGTCGGAATCCACTAAGACAAATTTGAAACCTAAATACAATAAAAAAGGAGGAGGCATGGGTATGATTCTGGCATTCTGTGAAGACAGTGAAGTTGAACAAGAAATGGGAGAGAAAGAGCGAAATAGATCGACGGGCCGGACCCAAGCAGAGTGAGTTGCGGCTGGAGAGTCATCAGTCGGCCTTGAATGAGGCAGGAGGTTCAAAGAATATTGACCAAGAGAATCAAAACTCCCCACCATAATGCACCAGATCTAGAACGAGGAAGCGAACCCCACTGCTGGAAGCGAATAAGCTGCTCGCTCGCTTTAATTAATAGAAGTACGAAAGCAGAATCGGAAGCGAACCCCACCTCTTTCCGGTCCCGTTGATGAATCGCATACGAAGTAGATTGAGTTTCAGTATCCTACCCTAGGGTGCTCTTGAATCTGGAGTTCGAACCTTATATCATTAATAAGAAAGGATTCC

Coding sequence (CDS)

ATGCAAGAACCGAGAAATTGCCAAGTTTTCAAGGATGAGTTGATCTCAGAGAATTTGCTTAAGACATTCATTCAGAGATTGATCAAGAAAAGAAGAAGAAAGATAGAAAAAGCTAGAACTACCGAGAAAGAATATCATCCCAATTCTCAGACAAAGAAAAGAAGGCACCCAATACTGAAAGAGGGTAGATGGCCAGCTACAGCTAAGCGGAGAAAAACTTCTCTACTTTTGGGAGAGAATAGACCAGAGAGGAAGCATCACTTATCTCGGAAGAGAAAGGGACCATACGGACTACGGCAAGGGCTCCGACCTTTCCCTATAGGTGGTCTATCAATCTCCATTCTCATCAGTGAAGGAGAGTTAACGGCTAGAACAACTGAGCTTAGTCGGAATCCACTAAGACAAATTTGA

Protein sequence

MQEPRNCQVFKDELISENLLKTFIQRLIKKRRRKIEKARTTEKEYHPNSQTKKRRHPILKEGRWPATAKRRKTSLLLGENRPERKHHLSRKRKGPYGLRQGLRPFPIGGLSISILISEGELTARTTELSRNPLRQI

Homology

[Close]

BLAST of MELO3C027566.jh1 vs. NCBI nr
Match: KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.60e-05
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MQEPRNCQVFKDELISENLLKTFIQRL 27
          MQEPRNCQVFKDELISENLLKTFIQ L
Sbjct: 1  MQEPRNCQVFKDELISENLLKTFIQSL 27

[Close]

BLAST of MELO3C027566.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.77e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MQEPRNCQVFKDELISENLLKTFIQRL 27
          MQEPRNCQVFKDELISENLLKTFIQ L
Sbjct: 1  MQEPRNCQVFKDELISENLLKTFIQSL 27

The following BLAST results are available for this feature:

BLAST of MELO3C027566.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062527.1	1.60e-05	96.30	uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027566.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027566.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6G0	7.77e-06	96.30	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C027566.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027566.jh1.t1	MELO3C027566.jh1.t1	mRNA