MELO3C027552 (gene) Melon (DHL92) v4

Overview
NameMELO3C027552
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransducin family protein / WD-40 repeat family protein
Locationchr12: 2354320 .. 2355599 (+)
RNA-Seq ExpressionMELO3C027552
SyntenyMELO3C027552
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAAGACAGGCGGCTAAATGCACAAATGTACTTGTTCATGGATGGGAATGAGAATCTGGAAGAGTTGGAGTCATTTCCTTTGCAGATATTTCAGGTGATTTGATGGAAGAAAGTTTGTGATAGAGTGAGAGTGAATGTGATGTTTTTTTTTTTTTTTTTTGGTTGGTTTGATTTCAGGCGTTGTTAGCGAAATTGGCAAGGATTGCAAGTATGGCAACAGATAAACTAAGGCCTACCCTCTACTTGAATAGATTTATTTTATATTCAAAATTACCAAAATTAAATTATCTCTATCAAAATTGTTGGATCTGTTTATGTCTAACATCCAATTTTGGTTTTTTTTTTTTTTTTTTTTTTGCTTCATTGTAATCCCAAATCTGAGCTAAATTGAAATTCAAGTTTGATCTTTCACTGTGGTTTCAGTTGGGGACTTCGTAGCTTCTTCAATCTTCAAGTCAATTTTGGTTCTAATTCAGTCCCTCATGATTCGAATTTTATTTTTTCGATCTTATTTCTACTTATGAGTTGGGTTTTTAGTTCTTGTGGACAATAGTTTTTAGTTCTCTAAGTAATTATGTTGAATTGCGGCTAAGGATTGTTTACTTATGGTGTATAGCTAGATGTTGCTATATCACATTGAAGATTATTATGTAAATGTTGTTTACTTTTTATTTTTTCTTTTCATTCTTTGTTATCAGACTGATGATAGTGTTTCAAATACACCAGTTAGTGCAAAGTGTGAAGTTTTGAAGCCTAGAGTTGCAGTTGCAAAGCACATTTCTAAGGTGATTGATCAATTTCAAAGTTCAAAAGCTCTTTGGACTTCTTTTTTCTTGCTACTCAATTTATGTGTCATGTGTTATTATATTGTTATTGGTTGCATATGTTTCCTGTGTGCTTCTAAAAAATGGTAGGTTTAGTCTTCATATTGAGAACAAGATATTGCTTTGCAATAGGCACTAACTCAACAACGCCTTTGTCCATTCCCAAAGGTATCTGAACTAAAAAACACATTTTGACTATTTTGTGATTTTTTAAAGGTATATTGATTGTTTTGTGAAAAATATTGATGGTTTTGTGAAATATATTGTCGGCTATGTGATGAAGCATTTTGGTAGCTTTCAATGTGTTTGATGAAATGTCTCGATGAAGCATTTGGTTGATTTTTAATTGATTTTTGTTTGTTTGAATTAGGAAATCAAAGTTAAGGGAGATTCCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAAATGAGTGGTTAGTT

mRNA sequence

ATGGAAGAAGAAGACAGGCGGCTAAATGCACAAATGTACTTGTTCATGGATGGGAATGAGAATCTGGAAGAGTTGGAGTCATTTCCTTTGCAGATATTTCAGACTGATGATAGTGTTTCAAATACACCAGTTAGTGCAAAGTGTGAAGTTTTGAAGCCTAGAGTTGCAGTTGCAAAGCACATTTCTAAGGAAATCAAAGTTAAGGGAGATTCCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAAATGAGTGGTTAGTT

Coding sequence (CDS)

ATGGAAGAAGAAGACAGGCGGCTAAATGCACAAATGTACTTGTTCATGGATGGGAATGAGAATCTGGAAGAGTTGGAGTCATTTCCTTTGCAGATATTTCAGACTGATGATAGTGTTTCAAATACACCAGTTAGTGCAAAGTGTGAAGTTTTGAAGCCTAGAGTTGCAGTTGCAAAGCACATTTCTAAGGAAATCAAAGTTAAGGGAGATTCCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAAATGAGTGGTTAGTT

Protein sequence

MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKHISKEIKVKGDSMAMGGSFEKKRMKNEWLV
Homology
[Close]
BLAST of MELO3C027552 vs. NCBI nr
Match: TYK01233.1 (putative actin [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH 60
          MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH
Sbjct: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH 60

Query: 61 ISKEIKVKGDSMAMGGSFEKKRMKNEW 88
          ISKEIKVKGDSMAMGGSFEKKRMKNEW
Sbjct: 61 ISKEIKVKGDSMAMGGSFEKKRMKNEW 87

[Close]
BLAST of MELO3C027552 vs. NCBI nr
Match: KAA0033851.1 (putative actin [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 7.1e-32
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQT-DDSVSNTPVSAKCEVLKPRVAVAK 60
          MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQ     ++   +SAKCEVLKPRVAVAK
Sbjct: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQALLAKLARIAISAKCEVLKPRVAVAK 60

Query: 61 HISKEIKVKGDSMAMGGSFEKKRMKNEW 88
          HISKEIKVKGDSMAMGGSFEKKRMKNEW
Sbjct: 61 HISKEIKVKGDSMAMGGSFEKKRMKNEW 88

[Close]
BLAST of MELO3C027552 vs. ExPASy TrEMBL
Match: A0A5D3BNA0 (Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00110 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.6e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH 60
          MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH
Sbjct: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQTDDSVSNTPVSAKCEVLKPRVAVAKH 60

Query: 61 ISKEIKVKGDSMAMGGSFEKKRMKNEW 88
          ISKEIKVKGDSMAMGGSFEKKRMKNEW
Sbjct: 61 ISKEIKVKGDSMAMGGSFEKKRMKNEW 87

[Close]
BLAST of MELO3C027552 vs. ExPASy TrEMBL
Match: A0A5A7SWL7 (Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00250 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.4e-32
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQT-DDSVSNTPVSAKCEVLKPRVAVAK 60
          MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQ     ++   +SAKCEVLKPRVAVAK
Sbjct: 1  MEEEDRRLNAQMYLFMDGNENLEELESFPLQIFQALLAKLARIAISAKCEVLKPRVAVAK 60

Query: 61 HISKEIKVKGDSMAMGGSFEKKRMKNEW 88
          HISKEIKVKGDSMAMGGSFEKKRMKNEW
Sbjct: 61 HISKEIKVKGDSMAMGGSFEKKRMKNEW 88

[Close]
BLAST of MELO3C027552 vs. TAIR 10
Match: AT2G19520.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 34  QTDDSVSNTPVSAKCEVLKPRVAVAKHISK 64
           QTD SV NT V A CEV+KPRVA A+HIS+
Sbjct: 116 QTDGSVPNTLVIANCEVVKPRVAAAEHISQ 145

The following BLAST results are available for this feature:
BLAST of MELO3C027552 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C027552 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01233.11.6e-39100.00putative actin [Cucumis melo var. makuwa][more]
KAA0033851.17.1e-3287.50putative actin [Cucumis melo var. makuwa][more]
BLAST of MELO3C027552 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BNA07.6e-40100.00Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00110 ... [more]
A0A5A7SWL73.4e-3287.50Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G002... [more]
BLAST of MELO3C027552 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19520.11.3e-0470.00Transducin family protein / WD-40 repeat family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027552.1MELO3C027552.1mRNA