MELO3C027440 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027440
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr08: 29540400 .. 29540560 (-)
RNA-Seq Expression	MELO3C027440
Synteny	MELO3C027440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTTAATAGCCTACATCTGAAGATGGAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAG

mRNA sequence

ctgttaatagcctacatctgaagatggAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAG

Coding sequence (CDS)

ATGGAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAG

Protein sequence

MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK

Homology

[Close]

BLAST of MELO3C027440 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           +EHSEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 499 VEHSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMK 544

[Close]

BLAST of MELO3C027440 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 208 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMK 252

[Close]

BLAST of MELO3C027440 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 256 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMK 300

[Close]

BLAST of MELO3C027440 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 512 ERSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMK 556

[Close]

BLAST of MELO3C027440 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYV+SLHYQLTALQNSS+R+TQEYESLNTDYVQMK
Sbjct: 231 ECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMK 275

[Close]

BLAST of MELO3C027440 vs. ExPASy TrEMBL
Match: A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           +EHSEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 499 VEHSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMK 544

[Close]

BLAST of MELO3C027440 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 256 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMK 300

[Close]

BLAST of MELO3C027440 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 208 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMK 252

[Close]

BLAST of MELO3C027440 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-14
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMK
Sbjct: 512 ERSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMK 556

[Close]

BLAST of MELO3C027440 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMK 47
           E SEEYEILKNYV+SLHYQLTALQNSS+R+TQEYESLNTDYVQMK
Sbjct: 231 ECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMK 275

The following BLAST results are available for this feature:

BLAST of MELO3C027440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036949.1	1.2e-14	93.48	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	4.5e-14	95.56	girdin-like [Cucumis melo var. makuwa]	[more]
TYK18656.1	4.5e-14	95.56	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036941.1	1.3e-13	93.33	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	6.5e-13	91.11	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6E2	5.7e-15	93.48	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=...	[more]
A0A5D3D533	2.2e-14	95.56	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	2.2e-14	95.56	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7T5S7	6.3e-14	93.33	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5A7V9X6	3.1e-13	91.11	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]

BLAST of MELO3C027440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027440.1	MELO3C027440.1	mRNA