MELO3C027268.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C027268.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Exopolygalacturonase-like
Location	chr01: 3822518 .. 3824042 (-)
RNA-Seq Expression	MELO3C027268.jh1
Synteny	MELO3C027268.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAATTACTATTATATTATTATTTTATCGTTTTACAAAAATCTTAAATTTCCGAAAATTCACATGATTTACTAAAATTTACCTCGATCTTCGGGGCGTTACACATATGGTGCCAAACCTAATATTGATATTATTCAGGTAAATATAAGATAAAATTTGTATTATATGTAATTCTAATTTATCTAATGAAATAATTCACTTTACAGGTTTTGGCAAATGCATGGAAGGATGCATGTGCATCAACCAATCCTAGTCAATTGATGATTCCAATAGGAGTTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAAGAGTACTATTGAGGTTCGAATGGAAGGAACATTACAAGCTCATCCCGAACCAACAGGAGTTGGGTTGGTTCTTTTTCAATATATCGATCAATTGACAGTGTCAAGCACGGGTGCTTTTGATGTCAAGGAGAAAATGGTTGGGAAAAGAATGATTGTCACTTGAAGAAAATATGCACTAAAATTTCCATGGTAAATTCTCTAATCATATTAGCTTCTTTCTATGTAATATCGTAGAATATATAATTTTTCAATTAATATATGCATTTTTTTAACTTGGATACCTTTTCTTTTTTGCGGGCGGGCCGGGGTTGAATTTGTAAGAATGTGAGGTTCAGTTTCATAACCAATTCAATAGTGAAGGACATAACTTCCTTGGATAGTAAGAATTTTCATATCCATCTCTTGGGTTGCAAGAATGTTACTTTTCAAAATGTGACAATTATTGTACCAGAGAAAAGCCCCAACACCGATGGAATTCATATGAGTAGTTCATAAGAGATTAACATTCTCAACAGGAGATGATTGTGTGCTGTTGGAGACAGCAACAAGCAAATAACTATTACTAATGTAATTTGTGGACCAAGACATGGCATTAGTATAGGAAGTTTAGGCAAGTACACTAAGGAAAAAGAGGTGACAGGAGTTACAGTGAGATCATCATGTAAATTAATCAATACTTTGAATGGTGTTAGAATCTTGGCCAGATTCTACAGTTGCATACACAGCCTCTGACTTGTATTTTGAAGATATTAAAATGGTTAATGTTAGCAATCCTGTCATTATTGACCAAGAATATTGTCCATCTAATCATAGCAACAAAAAGGTATATGTGTATTGAAATTAGTCCAGCTTATTCATAATTTTCAACTAATTAACATCAAGTAATATAACAAATGCAAAACTAACCTGATTTAATTATTTGTTTTCTTATGTATACGTTTGTTTAGATTCCATCAAAAATTAAGATATGTAACGTTAGTTTCAAGAATATCAAAGGCACTTCTGCTACTTTTGTCGCTGTTAAATTTATCTGTAGCAAAGATTTACCATGTGAAGGTGTGGAAGTTGATGATATTGACTTAGCTTACACTGGAACTCGAGGACGGATTACGCCTCAGTGTAGAAATGTGATTCCCATCATTACTGGAAAGCAAAATCCTCGTGCGTGTGTCGAAGTTGCTCCTATTAATTCTCCATCCACGGACTGA

mRNA sequence

ATATAATTACTATTATATTATTATTTTATCGTTTTACAAAAATCTTAAATTTCCGAAAATTCACATGATTTACTAAAATTTACCTCGATCTTCGGGGCGTTACACATATGGTGCCAAACCTAATATTGATATTATTCAGGTTTTGGCAAATGCATGGAAGGATGCATGTGCATCAACCAATCCTAGTCAATTGATGATTCCAATAGGAGTTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAAGAGTACTATTGAGGTTCGAATGGAAGGAACATTACAAGCTCATCCCGAACCAACAGGAGTTGGGTTGGTTCTTTTTCAATATATCGATCAATTGACAGTGTCAAGCACGGGTGCTTTTGATGTCAAGGAGAAAATGGTTGGGAAAAGAATGATTGTCACTTGAAGAAAATATGCACTAAAATTTCCATGAATGTGAGGTTCAGTTTCATAACCAATTCAATAGTGAAGGACATAACTTCCTTGGATAGTAAGAATTTTCATATCCATCTCTTGGGTTGCAAGAATGTTACTTTTCAAAATGTGACAATTATTGTACCAGAGAAAAGCCCCAACACCGATGGAATTCATATGAGTAGTTCATAAGAGATTAACATTCTCAACAGGAGATGATTGTGTGCTGTTGGAGACAGCAACAAGCAAATAACTATTACTAATGTAATTTGTGGACCAAGACATGGCATTAGTATAGGAAGTTTAGGCAAGTACACTAAGGAAAAAGAGGTGACAGGAGTTACAGTGAGATCATCATGTAAATTAATCAATACTTTGAATGGTGTTAGAATCTTGGCCAGATTCTACAGTTGCATACACAGCCTCTGACTTGTATTTTGAAGATATTAAAATGGTTAATGTTAGCAATCCTGTCATTATTGACCAAGAATATTGTCCATCTAATCATAGCAACAAAAAGATTCCATCAAAAATTAAGATATGTAACGTTAGTTTCAAGAATATCAAAGGCACTTCTGCTACTTTTGTCGCTGTTAAATTTATCTGTAGCAAAGATTTACCATGTGAAGGTGTGGAAGTTGATGATATTGACTTAGCTTACACTGGAACTCGAGGACGGATTACGCCTCAGTGTAGAAATGTGATTCCCATCATTACTGGAAAGCAAAATCCTCGTGCGTGTGTCGAAGTTGCTCCTATTAATTCTCCATCCACGGACTGA

Coding sequence (CDS)

ATGGTGTTAGAATCTTGGCCAGATTCTACAGTTGCATACACAGCCTCTGACTTGTATTTTGAAGATATTAAAATGGTTAATGTTAGCAATCCTGTCATTATTGACCAAGAATATTGTCCATCTAATCATAGCAACAAAAAGATTCCATCAAAAATTAAGATATGTAACGTTAGTTTCAAGAATATCAAAGGCACTTCTGCTACTTTTGTCGCTGTTAAATTTATCTGTAGCAAAGATTTACCATGTGAAGGTGTGGAAGTTGATGATATTGACTTAGCTTACACTGGAACTCGAGGACGGATTACGCCTCAGTGTAGAAATGTGATTCCCATCATTACTGGAAAGCAAAATCCTCGTGCGTGTGTCGAAGTTGCTCCTATTAATTCTCCATCCACGGACTGA

Protein sequence

MVLESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNIKGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACVEVAPINSPSTD

Homology

[Close]

BLAST of MELO3C027268.jh1 vs. NCBI nr
Match: KAA0059156.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02532.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 4.72e-90
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MVLESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFK 60
           MVLESWPDS VAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIP+KIKICNVSFK
Sbjct: 1   MVLESWPDSAVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPTKIKICNVSFK 60

Query: 61  NIKGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRA 120
           NIKGT ATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITP+CRNVIPIITGKQNPRA
Sbjct: 61  NIKGTYATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPRCRNVIPIITGKQNPRA 120

Query: 121 CVEVAPINSPSTD 133
           CVEVAPINSPSTD
Sbjct: 121 CVEVAPINSPSTD 133

[Close]

BLAST of MELO3C027268.jh1 vs. NCBI nr
Match: KAA0059139.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK21608.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 3.93e-73
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SWPDS VAYTASDL+FEDI+MVNVSNP+IIDQEYCPSN  NKKIPSKIKI NVSFKNI
Sbjct: 272 IKSWPDSAVAYTASDLHFEDIEMVNVSNPIIIDQEYCPSNQCNKKIPSKIKIRNVSFKNI 331

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSAT VA+KFICSKDLPCE VEV DI+L+YTGT+GRIT QCRNVIPIITGKQNPRAC+
Sbjct: 332 RGTSATPVAIKFICSKDLPCEDVEVADINLSYTGTQGRITSQCRNVIPIITGKQNPRACI 391

Query: 123 EVAPINSPSTD 133
           EVAPINSPSTD
Sbjct: 392 EVAPINSPSTD 402

[Close]

BLAST of MELO3C027268.jh1 vs. NCBI nr
Match: XP_008455507.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 236 bits (602), Expect = 7.78e-73
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SWPDS VAYTASDL+FEDI+MVNVSNP+IIDQEYCPSN  NKKIPSKIKI NVSFKNI
Sbjct: 393 IKSWPDSAVAYTASDLHFEDIEMVNVSNPIIIDQEYCPSNQCNKKIPSKIKIRNVSFKNI 452

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSATFVA+KFICSKDLPC+ VEV DI+L+YTGT+GRIT QCRNVIPIITGKQNPRAC+
Sbjct: 453 RGTSATFVAIKFICSKDLPCDDVEVADINLSYTGTQGRITSQCRNVIPIITGKQNPRACI 512

Query: 123 EVAPINSPSTD 133
           EVAPINSPSTD
Sbjct: 513 EVAPINSPSTD 523

[Close]

BLAST of MELO3C027268.jh1 vs. NCBI nr
Match: XP_031744868.1 (exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 227 bits (578), Expect = 1.87e-70
Identity = 110/131 (83.97%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WPD  VAYTASDL+FEDI+MVNVSNPVIIDQEYCPSN  NKKIPSKIKI NVSFKNI
Sbjct: 282 IKTWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKIPSKIKINNVSFKNI 341

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSATFVAVKFICS    CEGVEV DIDLAY GT+GRIT QCRNVIPIITGKQNPRACV
Sbjct: 342 RGTSATFVAVKFICSTVFSCEGVEVTDIDLAYIGTQGRITSQCRNVIPIITGKQNPRACV 401

Query: 123 EVAPINSPSTD 133
           E AP+NSPSTD
Sbjct: 402 EAAPVNSPSTD 412

[Close]

BLAST of MELO3C027268.jh1 vs. NCBI nr
Match: XP_011658673.1 (exopolygalacturonase [Cucumis sativus] >KAE8645719.1 hypothetical protein Csa_020328 [Cucumis sativus])

HSP 1 Score: 214 bits (546), Expect = 1.11e-65
Identity = 103/130 (79.23%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SWPDS  AYTASDL+FEDI+MVNVSNPV+I+QEYCP +  +KKIPSKIKI NVSFKNI
Sbjct: 273 IKSWPDSASAYTASDLHFEDIEMVNVSNPVVINQEYCPFDQCDKKIPSKIKISNVSFKNI 332

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSAT VA++ ICSKDLPCE VEV DIDL YTGT+GRIT QCRNVIPIITGKQNPRACV
Sbjct: 333 RGTSATSVAIQLICSKDLPCEDVEVADIDLTYTGTQGRITSQCRNVIPIITGKQNPRACV 392

Query: 123 EVAPINSPST 132
           E APIN+ ST
Sbjct: 393 EAAPINATST 402

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BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-32
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SW +S  A +ASDL+FEDI + NV NPVIIDQEYCP NH  +K PSK+K+  +SFKN+
Sbjct: 277 IKSWMNSFEA-SASDLHFEDITVTNVLNPVIIDQEYCPYNHCKEKTPSKVKLSKISFKNV 336

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRAC 122
            G + +   VK +CS  +PC+GVE+ DIDL + G  G    QC+NV PI+TGKQNP AC
Sbjct: 337 HGAAKSAEVVKLLCSSAVPCDGVELADIDLTFPG--GAAVSQCKNVKPIVTGKQNPVAC 392

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-31
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP +    TA+ ++FEDI +  VSNP++IDQEYCP N  NK  PS IK+ +++F+NI
Sbjct: 268 IKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNI 327

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTS    AVK +CSK  PCE VE+ DI++ YTG  G  T +C NV P + G QNP+ACV
Sbjct: 328 RGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQNPKACV 387

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-30
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP S      +D++FEDI + NVSNPV+IDQ YCP N  NK +PS++KI  VSF+NI
Sbjct: 271 IKTWPASHPG-VVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNI 330

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           KGTS T  AV  + SK +PCEG+EV DID+ Y+G  G     C N+ P + GKQNP  C 
Sbjct: 331 KGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVCT 390

Query: 123 EVAPINS 130
             A  +S
Sbjct: 391 ASAASSS 396

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.7e-29
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP S     AS+++F+DI M +V  P++IDQ YCP N    ++PS +K+  +SFKNI
Sbjct: 237 IKTWPKSEPG-EASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNI 296

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRAC 122
           KGTS T  AVK +CSK  PC GVE+ DIDL Y+G  G  T  C N+ P I GKQ P  C
Sbjct: 297 KGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAIC 354

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP S     AS++ FEDI M NVS PV+IDQEYCP  H    +PS++K+ +V+ K I
Sbjct: 319 IKTWPGSPPG-IASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGI 378

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           KGTSAT VAVK +CSK +PC  + + DI+L + G  G     C N+ PI++GK  P AC 
Sbjct: 379 KGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACT 438

Query: 123 EVA 126
           EVA
Sbjct: 439 EVA 440

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UY77 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00110 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 2.28e-90
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MVLESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFK 60
           MVLESWPDS VAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIP+KIKICNVSFK
Sbjct: 1   MVLESWPDSAVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPTKIKICNVSFK 60

Query: 61  NIKGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRA 120
           NIKGT ATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITP+CRNVIPIITGKQNPRA
Sbjct: 61  NIKGTYATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPRCRNVIPIITGKQNPRA 120

Query: 121 CVEVAPINSPSTD 133
           CVEVAPINSPSTD
Sbjct: 121 CVEVAPINSPSTD 133

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DDK3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00030 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 1.90e-73
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SWPDS VAYTASDL+FEDI+MVNVSNP+IIDQEYCPSN  NKKIPSKIKI NVSFKNI
Sbjct: 272 IKSWPDSAVAYTASDLHFEDIEMVNVSNPIIIDQEYCPSNQCNKKIPSKIKIRNVSFKNI 331

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSAT VA+KFICSKDLPCE VEV DI+L+YTGT+GRIT QCRNVIPIITGKQNPRAC+
Sbjct: 332 RGTSATPVAIKFICSKDLPCEDVEVADINLSYTGTQGRITSQCRNVIPIITGKQNPRACI 391

Query: 123 EVAPINSPSTD 133
           EVAPINSPSTD
Sbjct: 392 EVAPINSPSTD 402

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C129 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1)

HSP 1 Score: 236 bits (602), Expect = 3.77e-73
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           ++SWPDS VAYTASDL+FEDI+MVNVSNP+IIDQEYCPSN  NKKIPSKIKI NVSFKNI
Sbjct: 393 IKSWPDSAVAYTASDLHFEDIEMVNVSNPIIIDQEYCPSNQCNKKIPSKIKIRNVSFKNI 452

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSATFVA+KFICSKDLPC+ VEV DI+L+YTGT+GRIT QCRNVIPIITGKQNPRAC+
Sbjct: 453 RGTSATFVAIKFICSKDLPCDDVEVADINLSYTGTQGRITSQCRNVIPIITGKQNPRACI 512

Query: 123 EVAPINSPSTD 133
           EVAPINSPSTD
Sbjct: 513 EVAPINSPSTD 523

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BSV2 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00060 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 4.30e-63
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WPDS  AYTASDL+FEDI+MVNVSNP+II+QEYC SN  N KIPSKIKI NVSFKNI
Sbjct: 619 IKTWPDSASAYTASDLHFEDIEMVNVSNPIIINQEYCSSNQCNNKIPSKIKILNVSFKNI 678

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSAT VAVKFICSKDLPCEGVEV DIDLAY G  G+IT QC NVIPIITGKQNPRACV
Sbjct: 679 RGTSATSVAVKFICSKDLPCEGVEVADIDLAYNGIEGQITSQCVNVIPIITGKQNPRACV 738

Query: 123 EVAPINSPST 132
           E  PIN PST
Sbjct: 739 EATPINPPST 748

[Close]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UTD3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00800 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 4.53e-63
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WPDS  AYTASDL+FEDI+MVNVSNP+II+QEYC SN  N KIPSKIKI NVSFKNI
Sbjct: 623 IKTWPDSASAYTASDLHFEDIEMVNVSNPIIINQEYCSSNQCNNKIPSKIKILNVSFKNI 682

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTSAT VAVKFICSKDLPCEGVEV DIDLAY G  G+IT QC NVIPIITGKQNPRACV
Sbjct: 683 RGTSATSVAVKFICSKDLPCEGVEVADIDLAYNGIEGQITSQCVNVIPIITGKQNPRACV 742

Query: 123 EVAPINSPST 132
           E  PIN PST
Sbjct: 743 EATPINPPST 752

[Close]

BLAST of MELO3C027268.jh1 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 7.1e-34
Identity = 65/128 (50.78%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP +    TASD++FE+I + NVSNP++IDQEYCP N  NK+ PS IK+ N+SFK I
Sbjct: 268 IKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKI 327

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           +GTS    AVK +CSK  PC+ VEV D+++ YTG  G  T QC NV P + G Q P+AC 
Sbjct: 328 RGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC- 387

Query: 123 EVAPINSP 131
             +P+  P
Sbjct: 388 -SSPVTKP 393

[Close]

BLAST of MELO3C027268.jh1 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-33
Identity = 63/119 (52.94%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP +  + TASD++FEDI + +VSNP++IDQEYCP N  NK+  S IK+ N+SFKNI
Sbjct: 268 IKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNI 327

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRAC 122
           +GTS    AVK +CSK  PC+ VE+ DID+ Y G  G  T  C NV P I G Q+P+AC
Sbjct: 328 RGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 386

[Close]

BLAST of MELO3C027268.jh1 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-31
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP +  A TAS ++FE+I + NVSNP++IDQEYCP N  NK+ PS IK+ ++SFKNI
Sbjct: 269 IKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNI 328

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRAC 122
           +GTS    AVK +CSK  PC  VE+ +I+L Y G  G  T  C NV P + G QNP+AC
Sbjct: 329 RGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPKLVGTQNPKAC 387

[Close]

BLAST of MELO3C027268.jh1 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-31
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP +  + TAS+++FE+I + NVSNP++IDQEYCP N  NK+  S IK+ N+SF+ I
Sbjct: 269 IKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRI 328

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRAC 122
           +GTS    AVK +CSK  PCE V+V DI++ YTG  G  T  C NV P + G Q P+AC
Sbjct: 329 RGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 387

[Close]

BLAST of MELO3C027268.jh1 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 7.3e-31
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 3   LESWPDSTVAYTASDLYFEDIKMVNVSNPVIIDQEYCPSNHSNKKIPSKIKICNVSFKNI 62
           +++WP S     AS++ FEDI M NVS PV+IDQEYCP  H    +PSK+K+ +V+ KNI
Sbjct: 320 IKTWPGSPPG-IASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNI 379

Query: 63  KGTSATFVAVKFICSKDLPCEGVEVDDIDLAYTGTRGRITPQCRNVIPIITGKQNPRACV 122
           KGTSAT VAVK +CSK +PC  + + DI+L + G  G     C N+ PI++GK  P AC 
Sbjct: 380 KGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACT 439

Query: 123 EVA 126
           EVA
Sbjct: 440 EVA 441

The following BLAST results are available for this feature:

BLAST of MELO3C027268.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059156.1	4.72e-90	96.99	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02532.1 exopolygalactur...	[more]
KAA0059139.1	3.93e-73	85.50	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK21608.1 exopolygalactur...	[more]
XP_008455507.2	7.78e-73	85.50	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
XP_031744868.1	1.87e-70	83.97	exopolygalacturonase [Cucumis sativus]	[more]
XP_011658673.1	1.11e-65	79.23	exopolygalacturonase [Cucumis sativus] >KAE8645719.1 hypothetical protein Csa_02...	[more]

BLAST of MELO3C027268.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
W8P8Q3	6.4e-32	55.46	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
P35337	5.5e-31	50.83	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q05967	4.6e-30	50.39	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
P24548	8.7e-29	49.58	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
P49063	1.5e-28	49.59	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ...	[more]

BLAST of MELO3C027268.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY77	2.28e-90	96.99	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DDK3	1.90e-73	85.50	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C129	3.77e-73	85.50	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1	[more]
A0A5D3BSV2	4.30e-63	80.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7UTD3	4.53e-63	80.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of MELO3C027268.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48140.1	7.1e-34	50.78	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	2.7e-33	52.94	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	1.9e-31	52.10	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	4.3e-31	50.42	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	7.3e-31	51.22	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 11..108 e-value: 9.8E-24 score: 84.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..129 e-value: 7.4E-24 score: 86.4
None	No IPR available	PANTHER	PTHR31375:SF160	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 3..125
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 3..125
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 14..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027268.jh1.t1	MELO3C027268.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity