MELO3C027179 (gene) Melon (DHL92) v4

Overview
NameMELO3C027179
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMannose-6-phosphate isomerase
Locationchr09: 20488660 .. 20488980 (+)
RNA-Seq ExpressionMELO3C027179
SyntenyMELO3C027179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTTCCTGAAATTTTGCGAGGAGTTTCCTTGAATGAATACACAAGAAAGTATGCCCCTCCATTCGATGAATTCGAAGTGGATCGCTGTATTCTCCCACAAGCTGCATCCGTGTCCTTCCCATCCGTCCCAGGACCTTCTCTCTTTCTAGTGATGTCCGGAAAAGGGACAATTATCACAAGCTATTCCGAAGAAACTACATTTCAAGAAGGTGAAGTTCTGTTCGTTCCAGCATATATGGAAGTGAGTATAACAGCTACAGCTATAGAATTACATATGTACAGAGCTGGGATCAACAACAGATTCTTTCGAGACTTATGA

mRNA sequence

GGTTTTCCTGAAATTTTGCGAGGAGTTTCCTTGAATGAATACACAAGAAAGTATGCCCCTCCATTCGATGAATTCGAAGTGGATCGCTGTATTCTCCCACAAGCTGCATCCGTGTCCTTCCCATCCGTCCCAGGACCTTCTCTCTTTCTAGTGATGTCCGGAAAAGGGACAATTATCACAAGCTATTCCGAAGAAACTACATTTCAAGAAGGTGAAGTTCTGTTCGTTCCAGCATATATGGAAGTGAGTATAACAGCTACAGCTATAGAATTACATATGTACAGAGCTGGGATCAACAACAGATTCTTTCGAGACTTATGA

Coding sequence (CDS)

GGTTTTCCTGAAATTTTGCGAGGAGTTTCCTTGAATGAATACACAAGAAAGTATGCCCCTCCATTCGATGAATTCGAAGTGGATCGCTGTATTCTCCCACAAGCTGCATCCGTGTCCTTCCCATCCGTCCCAGGACCTTCTCTCTTTCTAGTGATGTCCGGAAAAGGGACAATTATCACAAGCTATTCCGAAGAAACTACATTTCAAGAAGGTGAAGTTCTGTTCGTTCCAGCATATATGGAAGTGAGTATAACAGCTACAGCTATAGAATTACATATGTACAGAGCTGGGATCAACAACAGATTCTTTCGAGACTTATGA

Protein sequence

GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIITSYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL
Homology
BLAST of MELO3C027179 vs. NCBI nr
Match: XP_004143675.1 (mannose-6-phosphate isomerase 1 [Cucumis sativus] >XP_011654856.1 mannose-6-phosphate isomerase 1 [Cucumis sativus] >KGN50328.1 hypothetical protein Csa_000669 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT
Sbjct: 346 GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 405

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEETT QEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL
Sbjct: 406 GYSEETTLQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 451

BLAST of MELO3C027179 vs. NCBI nr
Match: XP_038875726.1 (mannose-6-phosphate isomerase 1-like [Benincasa hispida] >XP_038875727.1 mannose-6-phosphate isomerase 1-like [Benincasa hispida] >XP_038875728.1 mannose-6-phosphate isomerase 1-like [Benincasa hispida] >XP_038875729.1 mannose-6-phosphate isomerase 1-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTI+T
Sbjct: 346 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIVT 405

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE TFQEGEVLFVPAYMEVSITA AIELHMYRAG+NNRFF DL
Sbjct: 406 GYSEEITFQEGEVLFVPAYMEVSITAAAIELHMYRAGVNNRFFGDL 451

BLAST of MELO3C027179 vs. NCBI nr
Match: XP_023511752.1 (mannose-6-phosphate isomerase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 4.4e-49
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILP AASVSFPSVPGPSLFL+MSGKGTI+T
Sbjct: 345 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVT 404

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEETTFQEGEVLFVPAYMEVS+TA A ELHMYRAG+NNRFFRDL
Sbjct: 405 GYSEETTFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFRDL 450

BLAST of MELO3C027179 vs. NCBI nr
Match: XP_022971761.1 (mannose-6-phosphate isomerase 1-like [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILP AASVSFPSVPGPSLFL+MSGKGTI+T
Sbjct: 345 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVT 404

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE+TFQEGEVLFVPAYMEVS+TA A ELHMYRAG+NNRFFRDL
Sbjct: 405 GYSEESTFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFRDL 450

BLAST of MELO3C027179 vs. NCBI nr
Match: XP_022921753.1 (mannose-6-phosphate isomerase 1-like [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 4.9e-48
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILP AASVSFPSVPGPSLFL+MSGKGTI+T
Sbjct: 345 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVT 404

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE TFQEGEVLFVPAYMEVS+TA A ELHMYRAG+NNRFF+DL
Sbjct: 405 GYSEEITFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFKDL 450

BLAST of MELO3C027179 vs. ExPASy Swiss-Prot
Match: Q9FZH5 (Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=PMI2 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           G+PEIL+G  L  Y  +Y PPFDEFEVD C LP+  S  FP+VPGPS++LV+ GKG + T
Sbjct: 337 GYPEILKGFPLTPYVTRYLPPFDEFEVDHCDLPRGKSTVFPAVPGPSVYLVIEGKGQLRT 396

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
             S +     G+VLFVPA +E+ +T  +  + +YRAG+++RFF+ L
Sbjct: 397 G-SSKVLVNRGDVLFVPADIEIHVTGESDVMKLYRAGVSSRFFQTL 441

BLAST of MELO3C027179 vs. ExPASy Swiss-Prot
Match: Q9M884 (Mannose-6-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=PMI1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           G+PEIL+G  +  Y  +Y PPF+EFEVD C LP  AS  FPSVPGPSL LV+ G+G + T
Sbjct: 329 GYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQGEGRMST 388

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRF 103
             S +     G+VLFVPA  E+ + +++ +L +YRAGIN+RF
Sbjct: 389 EASAD-GISMGDVLFVPADTEIHLRSSS-DLKLYRAGINSRF 428

BLAST of MELO3C027179 vs. ExPASy Swiss-Prot
Match: Q9GP38 (Probable mannose-6-phosphate isomerase OS=Echinococcus multilocularis OX=6211 GN=PMIH PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 16  RKYAPPFDEFEVDRCIL-PQAASVSFPSVPGPSLFLVMSGKGTII-----TSYSEETTFQ 75
           + + PP  EF VD      ++   S PSVP  S+ L + G+GTI       + S+ET F 
Sbjct: 339 KSFIPPVSEFAVDVIQFDAESRGFSLPSVPTASILLFLHGQGTITCPSTGEACSQETKFG 398

Query: 76  EGEVLFVPAYMEVSITATAI---ELHMYRAGINNR 102
            G V FVPA M V++ +       LH +RA +N +
Sbjct: 399 PGFVYFVPADMIVNLVSKEDRKGSLHAFRAYVNRK 433

BLAST of MELO3C027179 vs. ExPASy TrEMBL
Match: A0A0A0KL16 (Mannose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_5G167200 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT
Sbjct: 346 GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 405

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEETT QEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL
Sbjct: 406 GYSEETTLQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 451

BLAST of MELO3C027179 vs. ExPASy TrEMBL
Match: A0A6J1I443 (Mannose-6-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111470445 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.3e-49
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILP AASVSFPSVPGPSLFL+MSGKGTI+T
Sbjct: 345 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVT 404

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE+TFQEGEVLFVPAYMEVS+TA A ELHMYRAG+NNRFFRDL
Sbjct: 405 GYSEESTFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFRDL 450

BLAST of MELO3C027179 vs. ExPASy TrEMBL
Match: A0A6J1E4R0 (Mannose-6-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111429906 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILP AASVSFPSVPGPSLFL+MSGKGTI+T
Sbjct: 345 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVT 404

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE TFQEGEVLFVPAYMEVS+TA A ELHMYRAG+NNRFF+DL
Sbjct: 405 GYSEEITFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFKDL 450

BLAST of MELO3C027179 vs. ExPASy TrEMBL
Match: A0A6J1FJN3 (Mannose-6-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111444656 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLV+SGKGTIIT
Sbjct: 347 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVISGKGTIIT 406

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
            YSEE+T QEGEVLFVPAYMEVSIT+ A ELH+YRAG+NNRFF DL
Sbjct: 407 GYSEESTLQEGEVLFVPAYMEVSITSGATELHVYRAGVNNRFFGDL 452

BLAST of MELO3C027179 vs. ExPASy TrEMBL
Match: A0A6J1K047 (Mannose-6-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111489838 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.2e-45
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           GFPEIL+GVSLNEYTRKYAPPFDEFEVDRCILPQAASVSF SVPGPSLFLV+SGKGTIIT
Sbjct: 347 GFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFASVPGPSLFLVISGKGTIIT 406

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRD 106
            YSEE+T QEGEVLFVPAYMEVSIT+ A EL +YRAG+NNRFF D
Sbjct: 407 GYSEESTLQEGEVLFVPAYMEVSITSGATELRLYRAGVNNRFFGD 451

BLAST of MELO3C027179 vs. TAIR 10
Match: AT1G67070.1 (Mannose-6-phosphate isomerase, type I )

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-26
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           G+PEIL+G  L  Y  +Y PPFDEFEVD C LP+  S  FP+VPGPS++LV+ GKG + T
Sbjct: 337 GYPEILKGFPLTPYVTRYLPPFDEFEVDHCDLPRGKSTVFPAVPGPSVYLVIEGKGQLRT 396

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRFFRDL 107
             S +     G+VLFVPA +E+ +T  +  + +YRAG+++RFF+ L
Sbjct: 397 G-SSKVLVNRGDVLFVPADIEIHVTGESDVMKLYRAGVSSRFFQTL 441

BLAST of MELO3C027179 vs. TAIR 10
Match: AT3G02570.1 (Mannose-6-phosphate isomerase, type I )

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-24
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1   GFPEILRGVSLNEYTRKYAPPFDEFEVDRCILPQAASVSFPSVPGPSLFLVMSGKGTIIT 60
           G+PEIL+G  +  Y  +Y PPF+EFEVD C LP  AS  FPSVPGPSL LV+ G+G + T
Sbjct: 329 GYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQGEGRMST 388

Query: 61  SYSEETTFQEGEVLFVPAYMEVSITATAIELHMYRAGINNRF 103
             S +     G+VLFVPA  E+ + +++ +L +YRAGIN+RF
Sbjct: 389 EASAD-GISMGDVLFVPADTEIHLRSSS-DLKLYRAGINSRF 428

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004143675.11.6e-5198.11mannose-6-phosphate isomerase 1 [Cucumis sativus] >XP_011654856.1 mannose-6-phos... [more]
XP_038875726.12.0e-4993.40mannose-6-phosphate isomerase 1-like [Benincasa hispida] >XP_038875727.1 mannose... [more]
XP_023511752.14.4e-4991.51mannose-6-phosphate isomerase 1-like [Cucurbita pepo subsp. pepo][more]
XP_022971761.11.3e-4890.57mannose-6-phosphate isomerase 1-like [Cucurbita maxima][more]
XP_022921753.14.9e-4889.62mannose-6-phosphate isomerase 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9FZH52.7e-2550.00Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=PMI2 PE=1 SV=... [more]
Q9M8847.4e-2351.96Mannose-6-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=PMI1 PE=1 SV=... [more]
Q9GP381.8e-0535.79Probable mannose-6-phosphate isomerase OS=Echinococcus multilocularis OX=6211 GN... [more]
Match NameE-valueIdentityDescription
A0A0A0KL167.9e-5298.11Mannose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_5G167200 PE=3 SV... [more]
A0A6J1I4436.3e-4990.57Mannose-6-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111470445 PE=3 S... [more]
A0A6J1E4R02.4e-4889.62Mannose-6-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111429906 PE=3... [more]
A0A6J1FJN32.6e-4789.62Mannose-6-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111444656 PE=3... [more]
A0A6J1K0474.2e-4587.62Mannose-6-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111489838 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT1G67070.11.9e-2650.00Mannose-6-phosphate isomerase, type I [more]
AT3G02570.15.3e-2451.96Mannose-6-phosphate isomerase, type I [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 4..99
e-value: 1.1E-23
score: 84.9
IPR016305Mannose-6-phosphate isomerasePANTHERPTHR10309MANNOSE-6-PHOSPHATE ISOMERASEcoord: 1..104
NoneNo IPR availablePANTHERPTHR10309:SF10MANNOSE-6-PHOSPHATE ISOMERASEcoord: 1..104
NoneNo IPR availableCDDcd02208cupin_RmlC-likecoord: 48..90
e-value: 2.16198E-4
score: 34.7658
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 12..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027179.1MELO3C027179.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009298 GDP-mannose biosynthetic process
molecular_function GO:0004476 mannose-6-phosphate isomerase activity