MELO3C027080 (gene) Melon (DHL92) v4

Overview
NameMELO3C027080
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr06: 22347251 .. 22347705 (-)
RNA-Seq ExpressionMELO3C027080
SyntenyMELO3C027080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGGCTCGGCTCGGCTTGGCCTCGGCTCAACTCGGCTCGCGGCTCGGCTCAACTCGGCTCGACTCGGCTCGCGGCTCGGCTCAACTCGGCTTGTGGCTCGGCTCACGGCTCGGCTCGCGGCTCGCTCGATTCGGATTCGTGGCTTGGGTCGGCTTCACTTCGCGGCTCGGGTTCAACTCCTTTCTCCTTCCGACAACGACGGTGGTAGAAGGCAGCCCCTTGGTGTTCTGTCTGCGTCGGGCACACGGGATGAGGGGAAGGAAGCGTCGGAGGCTGCGATTGGAGTTAGAGACAGATCCGGTGTCGAACGGAGGAGCGGTAAGAAGCTCGGTTGTCGCGGGGGCTCAACGACAACAATCGGCCGACGACGTCGATTTCAGGTGAAGCTTCGACGTGGGACGCGGCTCGACGGAAGAAGACGAGGAGACGCGGACGAAGGCGGAAGCGTGCGTGA

mRNA sequence

CTCGGCTCGGCTCGGCTTGGCCTCGGCTCAACTCGGCTCGCGGCTCGGCTCAACTCGGCTCGACTCGGCTCGCGGCTCGGCTCAACTCGGCTTGTGGCTCGGCTCACGGCTCGGCTCGCGGCTCGCTCGATTCGGATTCGTGGCTTGGGTCGGCTTCACTTCGCGGCTCGGGTTCAACTCCTTTCTCCTTCCGACAACGACGGTGGTAGAAGGCAGCCCCTTGGTGTTCTGTCTGCGTCGGGCACACGGGATGAGGGGAAGGAAGCGTCGGAGGCTGCGATTGGAGTTAGAGACAGATCCGGTGTCGAACGGAGGAGCGGTAAGAAGCTCGGTTGTCGCGGGGGCTCAACGACAACAATCGGCCGACGACGTCGATTTCAGGTGAAGCTTCGACGTGGGACGCGGCTCGACGGAAGAAGACGAGGAGACGCGGACGAAGGCGGAAGCGTGCGTGA

Coding sequence (CDS)

CTCGGCTCGGCTCGGCTTGGCCTCGGCTCAACTCGGCTCGCGGCTCGGCTCAACTCGGCTCGACTCGGCTCGCGGCTCGGCTCAACTCGGCTTGTGGCTCGGCTCACGGCTCGGCTCGCGGCTCGCTCGATTCGGATTCGTGGCTTGGGTCGGCTTCACTTCGCGGCTCGGGTTCAACTCCTTTCTCCTTCCGACAACGACGGTGGTAGAAGGCAGCCCCTTGGTGTTCTGTCTGCGTCGGGCACACGGGATGAGGGGAAGGAAGCGTCGGAGGCTGCGATTGGAGTTAGAGACAGATCCGGTGTCGAACGGAGGAGCGGTAAGAAGCTCGGTTGTCGCGGGGGCTCAACGACAACAATCGGCCGACGACGTCGATTTCAGGTGAAGCTTCGACGTGGGACGCGGCTCGACGGAAGAAGACGAGGAGACGCGGACGAAGGCGGAAGCGTGCGT

Protein sequence

LGSARLGLGSTRLAARLNSARLGSRLGSTRLVARLTARLAARSIRIRGLGRLHFAARVQLLSPSDNDGGRRQPLGVLSASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRFQVKLRRGTRLDGRRRGDADEGGSVR
Homology
BLAST of MELO3C027080 vs. NCBI nr
Match: KAA0042365.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-24
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 67  DGGRRQPLGVLSASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRF 126
           +G    PL VLSASGT DE KEA E AIGVRDRSGVERRS KKLG RGGSTTTIGRRRR 
Sbjct: 90  EGCTYPPLSVLSASGTWDEEKEAPEVAIGVRDRSGVERRSDKKLGYRGGSTTTIGRRRRL 149

Query: 127 QVKLRRGTRLDGRRRGDADEGGSVR 152
           QVKLRR TRLDGRRRGDADEGG VR
Sbjct: 150 QVKLRRETRLDGRRRGDADEGGGVR 174

BLAST of MELO3C027080 vs. NCBI nr
Match: TYK31580.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 75/140 (53.57%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 18  NSARLGSRLGSTRLVARLTARLAARSIRIRGLGRLHFAARVQLLSPSDNDGGRRQPLGVL 77
           +S  L SRLGST                I G G    + R QL        G   P    
Sbjct: 117 HSLGLDSRLGST---------------SICGSGSDLCSTRQQLNEGQTTAEGSCSPWLFW 176

Query: 78  SASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRFQVKLRRGTRLD 137
           +A GTRDE KEA EA IGVRDRSGVERRSGKKLGCR GSTTTI RRRR QVKLRR TRLD
Sbjct: 177 AALGTRDEEKEAPEAGIGVRDRSGVERRSGKKLGCREGSTTTISRRRRLQVKLRRETRLD 236

Query: 138 ----------GRRRGDADEG 148
                      RRRGDAD G
Sbjct: 237 EKKTRRRGSTERRRGDADGG 241

BLAST of MELO3C027080 vs. NCBI nr
Match: TYK05046.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 65/135 (48.15%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 19  SARLGSRLGSTRLVARLTARLAAR--------SIRIRGLGRLHFAARVQLLSPSDNDGGR 78
           +ARL  +LGST   +RL A+ A R        S   RG G    + R +           
Sbjct: 77  AARLDPQLGSTWRNSRLAAQHATRLGFDRRLESAWSRGSGTALRSTRQRPNEGRTTTKRN 136

Query: 79  RQPLGVLSASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRFQVKL 138
             P    +AS  RDE KEA EAA+GVRDR GVERR  K++GCR GSTTTI RR R QVKL
Sbjct: 137 CSPRLFWAASSKRDEEKEAPEAAVGVRDRFGVERRGSKEVGCREGSTTTIDRRCRLQVKL 196

Query: 139 RRGTRLDG---RRRG 143
           R  TRL+G   RRRG
Sbjct: 197 RCETRLEGKKTRRRG 211

BLAST of MELO3C027080 vs. ExPASy TrEMBL
Match: A0A5A7TLP7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00770 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 67  DGGRRQPLGVLSASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRF 126
           +G    PL VLSASGT DE KEA E AIGVRDRSGVERRS KKLG RGGSTTTIGRRRR 
Sbjct: 90  EGCTYPPLSVLSASGTWDEEKEAPEVAIGVRDRSGVERRSDKKLGYRGGSTTTIGRRRRL 149

Query: 127 QVKLRRGTRLDGRRRGDADEGGSVR 152
           QVKLRR TRLDGRRRGDADEGG VR
Sbjct: 150 QVKLRRETRLDGRRRGDADEGGGVR 174

BLAST of MELO3C027080 vs. ExPASy TrEMBL
Match: A0A5D3E7L5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00750 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 75/140 (53.57%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 18  NSARLGSRLGSTRLVARLTARLAARSIRIRGLGRLHFAARVQLLSPSDNDGGRRQPLGVL 77
           +S  L SRLGST                I G G    + R QL        G   P    
Sbjct: 117 HSLGLDSRLGST---------------SICGSGSDLCSTRQQLNEGQTTAEGSCSPWLFW 176

Query: 78  SASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRFQVKLRRGTRLD 137
           +A GTRDE KEA EA IGVRDRSGVERRSGKKLGCR GSTTTI RRRR QVKLRR TRLD
Sbjct: 177 AALGTRDEEKEAPEAGIGVRDRSGVERRSGKKLGCREGSTTTISRRRRLQVKLRRETRLD 236

Query: 138 ----------GRRRGDADEG 148
                      RRRGDAD G
Sbjct: 237 EKKTRRRGSTERRRGDADGG 241

BLAST of MELO3C027080 vs. ExPASy TrEMBL
Match: A0A5D3C3P1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00090 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-11
Identity = 65/135 (48.15%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 19  SARLGSRLGSTRLVARLTARLAAR--------SIRIRGLGRLHFAARVQLLSPSDNDGGR 78
           +ARL  +LGST   +RL A+ A R        S   RG G    + R +           
Sbjct: 77  AARLDPQLGSTWRNSRLAAQHATRLGFDRRLESAWSRGSGTALRSTRQRPNEGRTTTKRN 136

Query: 79  RQPLGVLSASGTRDEGKEASEAAIGVRDRSGVERRSGKKLGCRGGSTTTIGRRRRFQVKL 138
             P    +AS  RDE KEA EAA+GVRDR GVERR  K++GCR GSTTTI RR R QVKL
Sbjct: 137 CSPRLFWAASSKRDEEKEAPEAAVGVRDRFGVERRGSKEVGCREGSTTTIDRRCRLQVKL 196

Query: 139 RRGTRLDG---RRRG 143
           R  TRL+G   RRRG
Sbjct: 197 RCETRLEGKKTRRRG 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042365.15.4e-2482.35NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK31580.11.1e-1653.57NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK05046.11.2e-1048.15NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TLP72.6e-2482.35NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3E7L55.3e-1753.57NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3C3P15.7e-1148.15NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027080.1MELO3C027080.1mRNA