MELO3C026909.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C026909.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	50S ribosomal protein L18-like
Location	chr11: 28446894 .. 28447136 (+)
RNA-Seq Expression	MELO3C026909.jh1
Synteny	MELO3C026909.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTAAGAAAGTGCTATGTGCTACGATCTTTGAAGTACATAATAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAATTGCGTCCACAGTCGAACACTCCATCAAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGACAGCAGCCGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCAACAGGGGCAAGGAAGAGGCATTCACGCAAACATAA

mRNA sequence

ATGATAGTAAGAAAGTGCTATGTGCTACGATCTTTGAAGTACATAATAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAATTGCGTCCACAGTCGAACACTCCATCAAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGACAGCAGCCGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCAACAGGGGCAAGGAAGAGGCATTCACGCAAACATAA

Coding sequence (CDS)

ATGATAGTAAGAAAGTGCTATGTGCTACGATCTTTGAAGTACATAATAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAATTGCGTCCACAGTCGAACACTCCATCAAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGACAGCAGCCGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCAACAGGGGCAAGGAAGAGGCATTCACGCAAACATAA

Protein sequence

MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT

Homology

[Close]

BLAST of MELO3C026909.jh1 vs. NCBI nr
Match: KAA0035229.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK22381.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 1.70e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL 60
          MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL
Sbjct: 1  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL 60

Query: 61 AMRLKVDGLNRGKEEAFTQT 80
          AMRLKVDGLNRGKEEAFTQT
Sbjct: 61 AMRLKVDGLNRGKEEAFTQT 80

[Close]

BLAST of MELO3C026909.jh1 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 3.58e-31
Identity = 64/76 (84.21%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YVLR   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. NCBI nr
Match: XP_022140774.1 (uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncharacterized protein LOC111011356 [Momordica charantia])

HSP 1 Score: 115 bits (288), Expect = 5.08e-31
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YVLR   SLKYI ANVVDRNNGR+VA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 114 bits (286), Expect = 1.02e-30
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (286), Expect = 1.02e-30
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot
Match: Q5F5U3 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLA 61
          +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A
Sbjct: 23 MVRLC-VFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRIA 82

Query: 62 MRLKVDGLNR 72
           + K  G+ +
Sbjct: 83 EKAKAAGVEK 89

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot
Match: A9M3V0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLA 61
          +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A
Sbjct: 23 MVRLC-VFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRIA 82

Query: 62 MRLKVDGLNR 72
           + K  G+ +
Sbjct: 83 EKAKAAGVEK 89

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot
Match: Q9JQQ6 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLA 61
          +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A
Sbjct: 23 MVRLC-VFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRIA 82

Query: 62 MRLKVDGLNR 72
           + K  G+ +
Sbjct: 83 EKAKAAGVEK 89

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot
Match: Q7DDT0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLA 61
          +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A
Sbjct: 23 MVRLC-VFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRIA 82

Query: 62 MRLKVDGLNR 72
           + K  G+ +
Sbjct: 83 EKAKAAGVEK 89

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot
Match: A1KRI9 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) OX=272831 GN=rplR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-04
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLA 61
          +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A
Sbjct: 23 MVRLC-VFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRIA 82

Query: 62 MRLKVDGLNR 72
           + K  G+ +
Sbjct: 83 EKAKAAGVEK 89

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DFB1 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00040 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 8.25e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL 60
          MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL
Sbjct: 1  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVL 60

Query: 61 AMRLKVDGLNRGKEEAFTQT 80
          AMRLKVDGLNRGKEEAFTQT
Sbjct: 61 AMRLKVDGLNRGKEEAFTQT 80

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CGQ4 (uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011356 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 2.46e-31
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YVLR   SLKYI ANVVDRNNGR+VA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 4.95e-31
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 4.95e-31
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVG
Sbjct: 1  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61 EVLAMRLKVDGLNRGK 73
          EVLAMRLKVDGL +G+
Sbjct: 61 EVLAMRLKVDGLEQGQ 76

[Close]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL
Match: A0A2P2K4N5 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 5.10e-31
Identity = 62/80 (77.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YVLR   SLKYI ANVVDRNNGRIVA ASTVEHSIK SLECGRSCNAK AAV+G
Sbjct: 1  MTVLKRYVLRLFISLKYITANVVDRNNGRIVASASTVEHSIKNSLECGRSCNAKAAAVIG 60

Query: 61 EVLAMRLKVDGLNRGKEEAF 77
          EVLAMRLKV+GL++G+   F
Sbjct: 61 EVLAMRLKVEGLDKGQGRGF 80

[Close]

BLAST of MELO3C026909.jh1 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 106.7 bits (265), Expect = 8.9e-24
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVG 60
          M V K YVLR   S+KYI ANVVDRNNGRIV  ASTVEH+IK SLECGR+CNAK AA+VG
Sbjct: 1  MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61 EVLAMRLKVDGLNRGK 74
          EVLAMRLKV+GL  G+
Sbjct: 61 EVLAMRLKVEGLQDGQ 76

The following BLAST results are available for this feature:

BLAST of MELO3C026909.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035229.1	1.70e-47	100.00	50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK22381.1 50S riboso...	[more]
XP_038901007.1	3.58e-31	84.21	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]
XP_022140774.1	5.08e-31	82.89	uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncha...	[more]
XP_022985582.1	1.02e-30	82.89	uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac...	[more]
XP_023511782.1	1.02e-30	82.89	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]

BLAST of MELO3C026909.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F5U3	7.6e-04	37.14	50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090...	[more]
A9M3V0	7.6e-04	37.14	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ...	[more]
Q9JQQ6	7.6e-04	37.14	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s...	[more]
Q7DDT0	7.6e-04	37.14	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX...	[more]
A1KRI9	7.6e-04	37.14	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s...	[more]

BLAST of MELO3C026909.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFB1	8.25e-48	100.00	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1CGQ4	2.46e-31	82.89	uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JBQ5	4.95e-31	82.89	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A6J1FXG0	4.95e-31	82.89	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A2P2K4N5	5.10e-31	77.50	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of MELO3C026909.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	8.9e-24	75.00	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 7..70 e-value: 6.7E-9 score: 36.1
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..74
None	No IPR available	GENE3D	3.30.420.100		coord: 4..77 e-value: 1.2E-12 score: 50.3
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 1..74
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 8..71 e-value: 8.2406E-11 score: 51.3867
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 8..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026909.jh1.t1	MELO3C026909.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome