MELO3C026697 (gene) Melon (DHL92) v4

Overview
NameMELO3C026697
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionFlagellar basal-body rod protein FlgB
Locationchr04: 21513653 .. 21513802 (+)
RNA-Seq ExpressionMELO3C026697
SyntenyMELO3C026697
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAAACAAAACTGTTGAGCAATCTGAAAAGAAAGGAACACCAACTACAACCAATCCATCTGGGAGAGACACCAAAATTGTATGCTTCGATGGTCTTGTGTTAGAGCAAGCACAACTTCGGGCCACTTCGCACAATGACGCATAA

mRNA sequence

ATGGCCGAAAACAAAACTGTTGAGCAATCTGAAAAGAAAGGAACACCAACTACAACCAATCCATCTGGGAGAGACACCAAAATTGTATGCTTCGATGGTCTTGTGTTAGAGCAAGCACAACTTCGGGCCACTTCGCACAATGACGCATAA

Coding sequence (CDS)

ATGGCCGAAAACAAAACTGTTGAGCAATCTGAAAAGAAAGGAACACCAACTACAACCAATCCATCTGGGAGAGACACCAAAATTGTATGCTTCGATGGTCTTGTGTTAGAGCAAGCACAACTTCGGGCCACTTCGCACAATGACGCATAA

Protein sequence

MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFDGLVLEQAQLRATSHNDA
Homology
BLAST of MELO3C026697 vs. NCBI nr
Match: KAA0054837.1 (hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK27771.1 hypothetical protein E5676_scaffold1142G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD 33
          MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD
Sbjct: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD 32

BLAST of MELO3C026697 vs. NCBI nr
Match: TYK15036.1 (hypothetical protein E5676_scaffold45G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFDGLVLEQAQLRATSHNDA 50
          M  NK  +QSEKK  P+  N   RDTKIVC DG V EQAQL ++SHN+A
Sbjct: 1  MVGNKNDDQSEKKDVPSKANSYERDTKIVCSDGPVSEQAQLASSSHNEA 49

BLAST of MELO3C026697 vs. NCBI nr
Match: TYK25880.1 (flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFDGLVLEQAQLRATSHND 49
          M  NK V+QSEKK   +  N S RD KI+CFDG +L+QAQL ++SHN+
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNE 48

BLAST of MELO3C026697 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD 33
          MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD
Sbjct: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFD 32

BLAST of MELO3C026697 vs. ExPASy TrEMBL
Match: A0A5D3CX63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00780 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFDGLVLEQAQLRATSHNDA 50
          M  NK  +QSEKK  P+  N   RDTKIVC DG V EQAQL ++SHN+A
Sbjct: 1  MVGNKNDDQSEKKDVPSKANSYERDTKIVCSDGPVSEQAQLASSSHNEA 49

BLAST of MELO3C026697 vs. ExPASy TrEMBL
Match: A0A5D3DRG2 (Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001040 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1  MAENKTVEQSEKKGTPTTTNPSGRDTKIVCFDGLVLEQAQLRATSHND 49
          M  NK V+QSEKK   +  N S RD KI+CFDG +L+QAQL ++SHN+
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNE 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054837.13.0e-08100.00hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK2777... [more]
TYK15036.14.1e-0559.18hypothetical protein E5676_scaffold45G00780 [Cucumis melo var. makuwa][more]
TYK25880.15.3e-0556.25flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVQ61.5e-08100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CX632.0e-0559.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRG22.6e-0556.25Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026697.1MELO3C026697.1mRNA