MELO3C025809.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C025809.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ubiquitin-like protein ATG12
Location	chr04: 18218294 .. 18221075 (+)
RNA-Seq Expression	MELO3C025809.jh1
Synteny	MELO3C025809.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAGAATTCATAGTTGACAATGAACTAAAAATTTGGGGCTTTTGGCATTGCAAAGCCCAAACTCAGGCCACGAACAATACGGAATTGCCCAACCAATATCTTTTGATCGAAATCGGAGAACGTACCCCACGAATTCTGCAGTCCACGGCCAAGGAAAACGATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGGTGAGCTTTAAAGGATGTATGAACAAGTCCAACTGTTTATTTTCCTATGTTTGATGAATCCAACATTCAAACTTTATTCAGTTTTCAGACTTAATTGTTCTGATGCAGAAGAAGATTTGTTTTGCAATTGTTGTTTTATTACGGTGCTTTCCTAATGACGTTTTCGATCAAGATTCATCGTGATTTATTCTGGTTTCGTTTCTGGCAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGGTTTGTATTATGTCAATTTTCGTCAGTTTATAGATTTAAAGGTTAAAAATTTGTATCATACTGTTTAAACTGTAAATTGGAAATCAATCTTGATGCTTGTGAAAACTTTTGATAATTTGATTTGATTAAAAAACTGAACTTTTACCGTCTGATTCTAGTAATCATGTATACCTATGTAGGTAAGGTTGTGTGTATGTGTGTGATGTTCTCTGAGTGAGCTAAACGGACTAGGCTAATAGATGAAGAAGACGACCAATCTAAGAGCCGAAGGAATGAAGCTTAAACTCTGTTGTTACACAAGTATTAGATCCCATGGATACAATGCCACATCCTTATCCCGTGCAAAATTCACATTTCAATCAAGATATCATTTTTGTCGGGAGTGTGACCAAAGTGCCACATTGCATAGATAAGGGAAAATTATGTGTATATTTGTAAGAACAACTATGTTCAATAGTATGATAACTTTGGGTGAGATATAAAACAAAGTTGCGAGAGTTTATGCCCTAAGTGGGCAATATCATACTATTGCAAAATATGTGGAGGCGTTGGAGGGTTGTTGTCCTCACAATTATCATGTGGATAATCACTGAAACTTTGTTGAAGATTTTGTAAGGATTTTGGGGGCCTTATTAGGTTCTCTGTTAGTTTCTCTCGTTTCTCGTTGACTTACAATTTACTCGAATAGAACCCCTTCTTGTAGTTGGCTCTCTTTTTTATGGGCTTCTTGTTTAACCGTGTTTTTTCTTCCATTTTTCTCAATGTTCGGCTTTTCATCCAAAAAATGAACAAATAAACAAAAATTATTAATTATGAGAACTTGAAGAAATTTTCAATGGATAATCGATGACTGATTAATGACTATTTGGGGGGGTGCTATATCCCTGTTATGCCGTGAATTTTTTCTGCACATGACTTGTGGTATTTATAAAATCTGGAATAAACATATAGAATCACCGGTCTTAGAATGTGCAGTTTTGTAAATTTTATACAGCAGCTCATCCATGAAAGTTCAACTTTTTGGAATTTGGTTTTCTACATTTGCAAGTTTATGGAAAACGTTCATTCACATATTTCATACATTTGACAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGGTATTCATCTGACTTGTGGAATAATCTCTTTTCCATCTGCCAATTCATTTGAAATTAATGACACTTCTCTATGCTAATTGTTTATATTCTTTGAAGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATGTGAGTTGATATTGACTCATTTCTTCTCTTTATGTTCAAGTTGCGTTTGTACACTGTTTATATTAACTTTTAGAAGAAAAGAAAAGAGGTGAGGGATGTGTGTGTGTGTGTTGGGGGGAGGGTGAATTGGTTGGAATCTATCTTAAAAAAATCTATTTATTGGCCGGTCAAAGCCTGTCATCTAAACTTAGGGGGTATATTCATTGAAGGTGTAGTGTAGACTTCTGATGTTGATGCTGGTCATGAATCATTCTTGAAAATACCCATCATTGTATATTTTTATGAGGTGAAGGGAAAAGGCTTGAGCAATCAAAATTTGAAAACTTCCTGAAGCAAGATATCTGTAAGAACTCTTAGATTATCATGAAACAAAATATAGCATAAGATCATATGAGTAACCTTAAATGTTTTTTTTATCACCCTTCCCCGAGGGTAATTATTCTCGACTTCATAGCAATTTTTTAATCTGTTTCTTTACTTAGGTATACATATATGGTTTTTCATATCCACATGCATCTAGAGTTTTATCATCTTGTGGATTATTCTTTTTTGTGTGTCTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTGAGTGCTGAGGCTGTAAATAGTATCTTGAACAGTTCATTCTAAGTACTGTGATTTTAAACTCACCCATTACGAACTATAGTGGTAGTAATCCTTCATATTATTGGCTGCTTTCCCCAATGAAAAACGAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAACTGTTTATTTGATCGACGTCTTTAATTAATTGTTTTAAGGTTGAATATGTTAACACAAGGATGTATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTACCCTACTCAGTTTCATATTTTTCTTTTTACAACGTAACAGTTGTTGAGACCAATACAAATCCTCATAAGTGCA

mRNA sequence

TCTAGAATTCATAGTTGACAATGAACTAAAAATTTGGGGCTTTTGGCATTGCAAAGCCCAAACTCAGGCCACGAACAATACGGAATTGCCCAACCAATATCTTTTGATCGAAATCGGAGAACGTACCCCACGAATTCTGCAGTCCACGGCCAAGGAAAACGATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTGAGTGCTGAGGCTGTAAATAGTATCTTGAACAGTTCATTCTAAGTACTGTGATTTTAAACTCACCCATTACGAACTATAGTGGTAGTAATCCTTCATATTATTGGCTGCTTTCCCCAATGAAAAACGAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAACTGTTTATTTGATCGACGTCTTTAATTAATTGTTTTAAGGTTGAATATGTTAACACAAGGATGTATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTACCCTACTCAGTTTCATATTTTTCTTTTTACAACGTAACAGTTGTTGAGACCAATACAAATCCTCATAAGTGCA

Coding sequence (CDS)

ATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

Protein sequence

MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Homology

[Close]

BLAST of MELO3C025809.jh1 vs. NCBI nr
Match: XP_008464001.1 (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 191 bits (484), Expect = 4.58e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. NCBI nr
Match: XP_004151012.1 (ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein Csa_001664 [Cucumis sativus])

HSP 1 Score: 189 bits (480), Expect = 1.87e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. NCBI nr
Match: XP_038878493.1 (ubiquitin-like protein ATG12 [Benincasa hispida])

HSP 1 Score: 187 bits (475), Expect = 1.08e-59
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M STESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. NCBI nr
Match: XP_022955552.1 (ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like protein ATG12 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6581816.1 Ubiquitin-like protein ATG12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018264.1 Ubiquitin-like protein ATG12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178 bits (452), Expect = 3.50e-56
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+SA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. NCBI nr
Match: XP_022153405.1 (ubiquitin-like protein ATG12 [Momordica charantia] >XP_022153406.1 ubiquitin-like protein ATG12 [Momordica charantia])

HSP 1 Score: 178 bits (451), Expect = 4.97e-56
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+S RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASKESSSSDRKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot
Match: Q1SF86 (Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-37
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M + ES TS RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot
Match: Q8S924 (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 2  TSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S +S RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot
Match: Q9LVK3 (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-34
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES  S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot
Match: A2YAG8 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30
Identity = 59/85 (69.41%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 11 RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDET 70
          +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 71 VIDLYNNFGIDGKLVVNYACSMAWG 96
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot
Match: Q69NP0 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30
Identity = 59/85 (69.41%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 11 RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDET 70
          +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 71 VIDLYNNFGIDGKLVVNYACSMAWG 96
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CKI1 (Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 2.22e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LIA6 (Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 9.05e-61
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GTZ1 (Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.69e-56
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+SA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL
Match: A0A6J1DGR5 (Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 2.41e-56
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+S RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASKESSSSDRKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J054 (Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV=1)

HSP 1 Score: 177 bits (448), Expect = 6.91e-56
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS S++KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSNSSKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of MELO3C025809.jh1 vs. TAIR 10
Match: AT1G54210.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-37
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 2  TSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S +S RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of MELO3C025809.jh1 vs. TAIR 10
Match: AT3G13970.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-35
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES  S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of MELO3C025809.jh1 vs. TAIR 10
Match: AT1G54210.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-10
Identity = 40/94 (42.55%), Postives = 43/94 (45.74%), Query Frame = 0


Query: 2  TSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S +S RKVVV LRATG APILKQ+KFK                             
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFK----------------------------- 52

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
                         NFG DGKLVVNYACSMAWG
Sbjct: 63 ---------------NFGFDGKLVVNYACSMAWG 52

The following BLAST results are available for this feature:

BLAST of MELO3C025809.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464001.1	4.58e-61	100.00	PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]	[more]
XP_004151012.1	1.87e-60	98.95	ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein ...	[more]
XP_038878493.1	1.08e-59	97.89	ubiquitin-like protein ATG12 [Benincasa hispida]	[more]
XP_022955552.1	3.50e-56	92.63	ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like...	[more]
XP_022153405.1	4.97e-56	93.68	ubiquitin-like protein ATG12 [Momordica charantia] >XP_022153406.1 ubiquitin-lik...	[more]

BLAST of MELO3C025809.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SF86	2.8e-37	77.89	Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1	[more]
Q8S924	2.4e-36	76.60	Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=...	[more]
Q9LVK3	2.9e-34	73.12	Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=...	[more]
A2YAG8	3.3e-30	69.41	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=...	[more]
Q69NP0	3.3e-30	69.41	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 P...	[more]

BLAST of MELO3C025809.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKI1	2.22e-61	100.00	Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1	[more]
A0A0A0LIA6	9.05e-61	98.95	Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=...	[more]
A0A6J1GTZ1	1.69e-56	92.63	Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 ...	[more]
A0A6J1DGR5	2.41e-56	93.68	Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3...	[more]
A0A6J1J054	6.91e-56	91.58	Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV...	[more]

BLAST of MELO3C025809.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54210.1	1.7e-37	76.60	Ubiquitin-like superfamily protein	[more]
AT3G13970.1	2.0e-35	73.12	Ubiquitin-like superfamily protein	[more]
AT1G54210.2	5.1e-10	42.55	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 6..95 e-value: 2.8E-35 score: 122.8
None	No IPR available	PANTHER	PTHR13385:SF2	UBIQUITIN-LIKE PROTEIN ATG12B	coord: 3..95
None	No IPR available	CDD	cd01612	Ubl_ATG12	coord: 12..94 e-value: 1.26856E-41 score: 129.559
IPR007242	Ubiquitin-like protein Atg12	PFAM	PF04110	APG12	coord: 12..95 e-value: 8.6E-30 score: 103.0
IPR007242	Ubiquitin-like protein Atg12	PANTHER	PTHR13385	AUTOPHAGY PROTEIN 12	coord: 3..95
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025809.jh1.t1	MELO3C025809.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
cellular_component	GO:0005737	cytoplasm