MELO3C024968.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C024968.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionSerine-rich protein-related, putative
Locationchr01: 10225785 .. 10226461 (-)
RNA-Seq ExpressionMELO3C024968.jh1
SyntenyMELO3C024968.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACAACGCAAACACCAAAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCAACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGGGGATTT

mRNA sequence

GAACAACGCAAACACCAAAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCAACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGGGGATTT

Coding sequence (CDS)

ATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGA

Protein sequence

MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFSP
Homology
BLAST of MELO3C024968.jh1 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 1.48e-57
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MDNKAD +APRPNDRN    NHN+NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADHRAPRPNDRN----NHNNNHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60

Query: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 117

BLAST of MELO3C024968.jh1 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 1.33e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 36  MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 95
           MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 60

Query: 96  IRGGSVGSNLSDLARKPTEIMGPFSP 121
           IRGGSVGSNLSDLARKPTEIMGPFSP
Sbjct: 61  IRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of MELO3C024968.jh1 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127 bits (318), Expect = 3.88e-35
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MD+K D +APRP DRN PNH            +H+   T+ +L D K   + L  SPS  
Sbjct: 1   MDHKPDHRAPRPIDRNNPNH------------HHKTQFTDFDLEDFKQGTNLLASSPSR- 60

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFS 120
           S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG SVGSNLS+LA K T++M  +S
Sbjct: 61  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYS 108

BLAST of MELO3C024968.jh1 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (263), Expect = 8.59e-27
Identity = 62/118 (52.54%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MD+K D +APRP             H H+  H++++  T+ +L DLK +   +LVSPS  
Sbjct: 1   MDHKPDHRAPRP------------THRHSLDHHNKIGFTDFDLEDLKRSPR-VLVSPSLH 60

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRH-AGMIRGGSVGSNLSDLARKPTEIMG 117
           S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG++RGGSVGSNLSDL RK +E MG
Sbjct: 61  SSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105

BLAST of MELO3C024968.jh1 vs. NCBI nr
Match: KAF4362350.1 (hypothetical protein F8388_008234 [Cannabis sativa])

HSP 1 Score: 101 bits (252), Expect = 3.48e-25
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94
           ++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  G
Sbjct: 20  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSLG 79

Query: 95  MIRGGSVGSNLSDLARKPTEI 115
           M+RGGSVGSNL+DL RK + I
Sbjct: 80  MLRGGSVGSNLADLGRKSSSI 100

BLAST of MELO3C024968.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 184 bits (466), Expect = 7.18e-58
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MDNKAD +APRPNDRN    NHN+NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADHRAPRPNDRN----NHNNNHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60

Query: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 117

BLAST of MELO3C024968.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 6.42e-57
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 36  MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 95
           MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGM 60

Query: 96  IRGGSVGSNLSDLARKPTEIMGPFSP 121
           IRGGSVGSNLSDLARKPTEIMGPFSP
Sbjct: 61  IRGGSVGSNLSDLARKPTEIMGPFSP 86

BLAST of MELO3C024968.jh1 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.68e-25
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94
           ++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  G
Sbjct: 20  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSLG 79

Query: 95  MIRGGSVGSNLSDLARKPTEI 115
           M+RGGSVGSNL+DL RK + I
Sbjct: 80  MLRGGSVGSNLADLGRKSSSI 100

BLAST of MELO3C024968.jh1 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.58e-25
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94
           ++ + E+NL D K + H L+VSP   + +    SS ++NCLCSPTTH+GSFRCRHHR  G
Sbjct: 35  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSLG 94

Query: 95  MIRGGSVGSNLSDLARKPTEI 115
           M+RGGSVGSNL+DL RK + I
Sbjct: 95  MLRGGSVGSNLADLGRKSSSI 115

BLAST of MELO3C024968.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.51e-23
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94
           + A+ EL+L +LK ++H+L++SP+  S  +K+PS+ K+NCLCSPTTHIGSFRCR HR   
Sbjct: 21  KSALPELDLDELKKSSHNLVMSPTALSRMSKSPST-KSNCLCSPTTHIGSFRCRRHRSTA 80

Query: 95  MIRGGSVGSNLSDLARK 111
           + RGGSVGSNLSDLA+K
Sbjct: 81  ISRGGSVGSNLSDLAQK 96

BLAST of MELO3C024968.jh1 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 56  SPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDL 109
           SPS     + +  S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 46  SPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

BLAST of MELO3C024968.jh1 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 57.4 bits (137), Expect = 9.3e-09
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRH---AGMIRGGSVGSNLSDLA 110
           S      SS + NCLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN44385.11.48e-5778.69hypothetical protein Csa_015645 [Cucumis sativus][more]
KAA0048240.11.33e-56100.00putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D... [more]
KAG7024984.13.88e-3557.02hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607735.18.59e-2752.54hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4362350.13.48e-2556.79hypothetical protein F8388_008234 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3W37.18e-5878.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1[more]
A0A5A7TYF36.42e-57100.00Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A7J6EXD71.68e-2556.79Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1[more]
A0A7J6H8T32.58e-2556.79Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1[more]
A0A6J1CNY22.51e-2361.04uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT5G55980.18.4e-1054.72serine-rich protein-related [more]
AT3G13227.19.3e-0959.62serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..71
NoneNo IPR availablePANTHERPTHR33132:SF73SERINE-RICH PROTEIN-LIKE PROTEINcoord: 56..108
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 56..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024968.jh1.t1MELO3C024968.jh1.t1mRNA