MELO3C024931 (gene) Melon (DHL92) v4

Overview
NameMELO3C024931
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 10639893 .. 10640089 (+)
RNA-Seq ExpressionMELO3C024931
SyntenyMELO3C024931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAAGGTCTTCTTAACAAATCCTTTCCCTATTATGACAAACTTGCATATGTGTTCGGAAGGGATAAGGTGACGGGTCGCTTTGTAGAGACGTTCGTTGATGTCAGGTGTAATGAGCCTATCGGGTATGAGGGGTTTGATATGCCAGATGGAAACGATCCGTTGAGCGTTTTCATCCATGTACAGCTAGGAGATTGA

mRNA sequence

CGAAAGGTCTTCTTAACAAATCCTTTCCCTATTATGACAAACTTGCATATGTGTTCGGAAGGGATAAGGTGACGGGTCGCTTTGTAGAGACGTTCGTTGATGTCAGGTGTAATGAGCCTATCGGGTATGAGGGGTTTGATATGCCAGATGGAAACGATCCGTTGAGCGTTTTCATCCATGTACAGCTAGGAGATTGA

Coding sequence (CDS)

AAAGGTCTTCTTAACAAATCCTTTCCCTATTATGACAAACTTGCATATGTGTTCGGAAGGGATAAGGTGACGGGTCGCTTTGTAGAGACGTTCGTTGATGTCAGGTGTAATGAGCCTATCGGGTATGAGGGGTTTGATATGCCAGATGGAAACGATCCGTTGAGCGTTTTCATCCATGTACAGCTAGGAGATTGA

Protein sequence

KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGNDPLSVFIHVQLGD
Homology
BLAST of MELO3C024931 vs. NCBI nr
Match: KAA0049673.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           K LLNKSFPYYD+LAYVF +DK TGRF ETFVDV  NEP+GYEGFDMPDGND
Sbjct: 55  KDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVGYEGFDMPDGND 106

BLAST of MELO3C024931 vs. NCBI nr
Match: KAA0066074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 6.0e-17
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
          KG+LNK FPYYD+LAYVFG+D+V GRF ETFVDV  NEP+GYEGFDMPDGN+
Sbjct: 43 KGVLNKLFPYYDELAYVFGQDRVMGRFAETFVDVGSNEPVGYEGFDMPDGNE 94

BLAST of MELO3C024931 vs. NCBI nr
Match: KAA0051922.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 2  GLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGNDPLS 56
          GLLNK FPYY++LAYVFGR++V GRFVETFVDV  NEP GY+GFDMPDGN+  S
Sbjct: 14 GLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFS 67

BLAST of MELO3C024931 vs. NCBI nr
Match: KAA0050217.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98191.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           KGL NK FPYYD+LAYVF RD+ TG FVETFVDV  NEPIGYEGFD+P+GND
Sbjct: 69  KGLFNKLFPYYDELAYVFERDRATGHFVETFVDVESNEPIGYEGFDIPNGND 120

BLAST of MELO3C024931 vs. NCBI nr
Match: KAA0048337.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01128.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           KGLLNK F YYD+ AYVFGRD++ GRFV+TFVDV  NEP+GYEGFDMPDGN+
Sbjct: 102 KGLLNKLFSYYDEFAYVFGRDRMVGRFVKTFVDVGSNEPVGYEGFDMPDGNE 153

BLAST of MELO3C024931 vs. ExPASy TrEMBL
Match: A0A5A7U1E5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00080 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-18
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           K LLNKSFPYYD+LAYVF +DK TGRF ETFVDV  NEP+GYEGFDMPDGND
Sbjct: 55  KDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVGYEGFDMPDGND 106

BLAST of MELO3C024931 vs. ExPASy TrEMBL
Match: A0A5A7VFJ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
          KG+LNK FPYYD+LAYVFG+D+V GRF ETFVDV  NEP+GYEGFDMPDGN+
Sbjct: 43 KGVLNKLFPYYDELAYVFGQDRVMGRFAETFVDVGSNEPVGYEGFDMPDGNE 94

BLAST of MELO3C024931 vs. ExPASy TrEMBL
Match: A0A5D3CLE8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00480 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 2  GLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGNDPLS 56
          GLLNK FPYY++LAYVFGR++V GRFVETFVDV  NEP GY+GFDMPDGN+  S
Sbjct: 14 GLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFS 67

BLAST of MELO3C024931 vs. ExPASy TrEMBL
Match: A0A5A7U768 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00800 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           KGL NK FPYYD+LAYVF RD+ TG FVETFVDV  NEPIGYEGFD+P+GND
Sbjct: 69  KGLFNKLFPYYDELAYVFERDRATGHFVETFVDVESNEPIGYEGFDIPNGND 120

BLAST of MELO3C024931 vs. ExPASy TrEMBL
Match: A0A5A7U269 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00250 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1   KGLLNKSFPYYDKLAYVFGRDKVTGRFVETFVDVRCNEPIGYEGFDMPDGND 53
           KGLLNK F YYD+ AYVFGRD++ GRFV+TFVDV  NEP+GYEGFDMPDGN+
Sbjct: 102 KGLLNKLFSYYDEFAYVFGRDRMVGRFVKTFVDVGSNEPVGYEGFDMPDGNE 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049673.11.2e-1782.69retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066074.16.0e-1778.85retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon p... [more]
KAA0051922.12.3e-1675.93retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon p... [more]
KAA0050217.13.0e-1678.85retrotransposon protein [Cucumis melo var. makuwa] >TYJ98191.1 retrotransposon p... [more]
KAA0048337.13.9e-1676.92retrotransposon protein [Cucumis melo var. makuwa] >TYK01128.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U1E55.9e-1882.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VFJ22.9e-1778.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CLE81.1e-1675.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7681.5e-1678.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2691.9e-1676.92Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024931.1MELO3C024931.1mRNA